Computer Aided Medical Procedures II (CAMP II) - IN2022
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Lecture by
Prof. Dr. Nassir Navab
Type: Lecture
Module IN2022
Programs: Informatics (Bachelor, Master), Informatics (Diploma: Praktische Informatik, Vertiefungsfach), Information Systems (Bachelor), Computational Science and Engineering (Master), TUM-BWL (Technikfach)
SWS: 2+2
ECTS: 5 Credits
Course Language: English
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Further Information:
- The classes and exam are in English.
- This lecture is the successor of "Computer Aided Medical Procedures" (which is recommended but not obligatory).
- In case of organizational questions, please contact Martin Groher.
- Second Attestation takes place on Tuesday, July 7 and on Wednesday, July 8, starting at 16:00. Please download the schedule and pick a time slot you like (the file will be updated during the day). Then send an e-mail with your choice to Loren Schwarz until tonight, July 6.
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Attention: CLOSED BOOK (NO MATERIAL WILL BE ALLOWED DURING THE EXAM)!!!
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Dates
- Tuesdays 13:00 - 14:30 MI 03.13.010 from 21.04.2009 to 21.07.2009 weekly
- Thursdays 14:30 - 16:00 MI 03.13.008 from 23.04.2009 to 23.07.2009 weekly Exercise
Abstract
This lecture teaches students to transfer their knowledge from the field of medical imaging and computer assisted interventions to practical algorithms. During the classes, the students get exposed to particular problems from segmentation, registration, navigation, tracking, and medical augmented reality and are then guided when implementing those algorithms themselves using MATLAB during the excercises.
The excercises take place in a lab room with MATLAB workstations.
For a more detailed overview, see
last year's lecture.
Prerequisites
- Basic knowledge in image computing (not necessarily acquired through the CAMP I lecture)
- Interest in algorithmic/implementation aspects
- Ability to work in small teams
- Specific knowledge in MATLAB is not required but beneficial. However, you should be somehow skilled in programming.
Benefits
- Deep insight into medical image computing
- Ability to implement solutions for computer aided medical procedures
Exam
- Attestation days: Each student has to present and explain the exercises he has implemented. For each attestation you can earn 20 points. Note that all programs have to work in order to get all points.
- In the exam itself you can earn up to 80 points.
- In total you can earn up to 120 points. In order to pass the exam (mask >= 4.0) you will need at least 50 points. For mark 1.0 you need at least 95 points.
Course Schedule
Literature
Primary Literature
- Image Processing / (Filtering, Morpholgical Operations, and Basic Segmentation Methods):
- Segmentation:
- Advanced Segmentation:
- Leo Grady, Yiyong Sun, James Williams. Three interactive graph-based segmentation methods applied to cardiovascular imaging. In Nikos Paragios, Yunmei Chen, Olivier Faugeras, editors. Handbook of mathematical models in computer vision. Springer, 2006.
- Yuri Boykov and Marie-Pierre Jolly. Interactive organ segmentation using graph cuts. In Scott L. Delp, Anthony M. DiGioia, and Branislav Jaramaz, editors, MICCAI, volume 1935 of Lecture Notes in Computer Science, pages 276--286. Springer, 2000.
- Y. Boykov and O. Veksler. Graph cuts in vision and graphis: theories and applications. In Nikos Paragios, Yunmei Chen, Olivier Faugeras, editors. Handbook of mathematical models in computer vision. Springer, 2006.
- Yuri Boykov, Gareth Funka-Lea. Graph Cuts and Efficient N-D Image Segmentation. In International Journal of Computer Vision (IJCV), vol. 70, no. 2, pp. 109-131, 2006.
- Leo Grady and Gareth Funka-Lea. Multi-label image segmentation for medical applications based on graph-theoretic electrical potentials. In Milan Sonka, Ioannis A. Kakadiaris, and Jan Kybic, editors, Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, ECCV 2004 Workshops CVAMIA and MMBIA, number LNCS3117 in Lecture Notes in Computer Science, pages 230--245, Prague, Czech Republic, May 2004. Springer.
- Leo Grady and Eric Schwartz. Anisotropic interpolation on graphs: The combinatorial Dirichlet problem. Technical Report CAS/CNS-TR-03-014, Department of Cognitive and Neural Systems, Boston University, Boston, MA, July 2003.
- Web Page of Leo Grady a.k.a. everything you gotta know about random walker...
- Registration:
- [Hajnal2001] J. V. Hajnal, D. L. G. Hill, and D. J. Hawkes: Medical Image Registration. CRC Press, Biomedical Engineering Series, 2001
- Deformable Registration:
- [Modersitzki2004] Jan Modersitzki. Numerical methods for image registration. Oxford University Press, 2004.
- Visualization:
- Christof Rezk-Salama, Klaus Engel, Markus Hadwiger, Joe M. Kniss and Daniel Weiskopf: Real Time Volume Graphics, Transatlantic Publishers, 2006
Secondary Literature
- Overview:
- Modalities:
- Computer Aided Surgery:
- [CAS] Various Volumes of Computer Aided Surgery
- [CARS] Various Proceedings of CARS (Computer Assisted Radiology and Surgery - International Congress and Exhibition)
- [Grimson1999] W. Eric L. Grimson, Ron Kikinis, Ferenc A. Jolesz, and Peter McL. Black: Image-Guided Surgery. Scientific American, 280(6) pp. 62-69, 1999
- Computer Vision: