TeachingWs09CAMPLecture

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Computer Aided Medical Procedures (CAMP) - IN2021

  Lecture by Prof. Dr. Nassir Navab & invited speakers.

IN2021: 4+0 SWS, 6 ECTS, Praktische Informatik, Wahlfach

Time & Location:

  • On Tuesdays, the lecture will be transmitted to IFL at Klinikum rechts der Isar via live video-conferencing.

Further information:

  • The classes and exam are in English.
  • In case of organizational questions, please contact Nicolas Brieu.
  • The exam results have been published at TUMonline
  • The repeat exam will be held on Tuesday 13.04.2010 from 15:30 to 17:00 in MW-0337.

ALERT! Please register for the lecture (see below), so we can send announcements to you.

Abstract

Computer science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors.

This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes.

There will be invited guests from the hospital Rechts der Isar and also medical companies in the classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.

Here is a rough overview of the topics that were presented in last year's lecture:

  • Introduction
  • Computer-Aided Surgery and Exemplary Applications
  • Image Processing and Segmentation
  • Registration
  • Basics of Tracking Technologies
  • Visualization and Medical Augmented Reality
  • Surgical Workflow - Analysis, Monitoring and Applications
  • Basics of Radiography (X-Ray, CT etc.) - Physical Properties, Applications, Radiation Therapy
  • Magnetic Resonance Imaging - Basics, Advanced MRI and Applications
  • Ultrasound Imaging
  • Nuclear Medicine (PET/SPECT)

For a more detailed overview, see last year's lecture?.

Prerequisites:

  • Interest in medical image processing

Benefits:

  • Knowledge in medical image acquisition / image modalities
  • Deep insight into medical image computing

This lecture is going to be succeeded by "Computer Aided Medical Procedures II" (see SS08 CAMP 2 lecture page)? (2+2 SWS, 6 ECTS) in the next summer term (which is recommended, but not obligatory).

Course Registration

ALERT! Please fill in this as soon as possible.

Alternatively, you can write an email to Nicolas Brieu providing information about your name, email address, matriculation number, semester, and lectures your are attending at this chair (CAMP, 3DCV). Please use the following line as the subject: "[Teaching][CAMP] Registration for CAMP". We will send you a confirmation email - in case you do not receive any confirmation email within approximately one week, please contact us again. Your registration is not binding but enables us to send you information about changes in schedule in the future.

Course Schedule

A password is needed to access the lecture slides. This will be announced in the first lecture.

Date Type Topic Speaker Materials
Tue, Oct 20 CAMP Organisational Meeting Nicolas Brieu, Tobias Reichl  Slides
Thu, Oct 22 CAMP Introduction 1 Prof. Dr. Nassir Navab  Slides
Tue, Oct 27 CAMP Introduction 2 - Brief History of Radiology Prof. Dr. Nassir Navab  Slides
Thu, Oct 29 CAMP Image Processing and Segmentation 1 Nicolas Brieu  Slides
Tue, Nov 3 CAMP Image Processing and Segmentation 2 Nicolas Brieu  Slides
Thu, Nov 5 Trip Field Trip to Siemens AG Healthcare (see information below) Siemens AG Healthcare (not available)
Tue, Nov 10 Invited Cone-Beam Reconstruction Dr. Günter Lauritsch, Siemens AG Healthcare  Slides
Thu, Nov 12 CAMP Image Processing and Segmentation 3 Andreas Keil  Slides  Additional
Tue, Nov 17 Invited Ultrasound Imaging Dr. Marcus Schreckenberg, TomTec GmbH  Slides 2008
Thu, Nov 19 Invited Magnetic Resonance Imaging - Basics and Applications Dr. Stephan Nekolla, Nuklearmedizinische Klinik, Klinikum r. d. Isar  Slides
Tue, Nov 24 Invited Advanced MRI Dr. Stephan Nekolla, Nuklearmedizinische Klinik, Klinikum r. d. Isar  Slides
Thu, Nov 26 Invited Physical Properties of Radiation with Applications in X-Ray and Radiation Therapy Prof. Dr. Peter Kneschaurek, Klinik für Strahlentherapie, Klinikum r. d. Isar  Slides
Tue, Dec 1 CAMP Image Segmentation 4 and Exercises Nicolas Brieu, Tobias Reichl  Exercise
Thu, Dec 3 CAMP Basics of Transformations Loren Schwarz  Slides
Tue, Dec 8 Invited Nuclear Medicine (PET/SPECT) Ralph Bundschuh, Nuklearmedizinische Klinik, Klinikum r. d. Isar  Slides
Thu, Dec 10 CAMP Registration 1: intensity-based registration Christian Wachinger  Slides
Tue, Dec 15 CAMP Registration 2: feature-based registration Dr. Martin Groher  Slides
Thu, Dec 17 Invited 3D/2D registration for image guided interventions and the problem of validation Prof. Franjo Pernuš, PhD, University of Ljubljana, Slovenia  Slides-1  Slides-2
Tue, Dec 22 CAMP Registration 3: deformable registration Loren Schwarz  Slides
Thu, Dec 24 - Merry Christmas! (no classes until Jan 7) - -
Thu, Jan 7 CAMP Computer-Aided Surgery and Exemplary Applications Prof. Dr. Nassir Navab  Slides-1  Slides-2
Tue, Jan 12 Trip Field Trip to BrainLAB AG (see information below) BrainLAB AG -
Thu, Jan 14 CAMP Markov Random Fields in Medical Image Analysis Ben Glocker  Slides
Tue, Jan 19 Invited High Tech Medical Device Startup: Essential Difference between Development for Market and Science Dr. Joerg Traub, SurgicEye GmbH  Slides
Thu, Jan 21 Invited Registration-Free Navigation for Surgery Prof. Dr. med. Ekkehard Euler, Chirurgische Klinik, Klinikum Innenstadt  Slides
Tue, Jan 26 CAMP Medical Augmented Reality - Definition and State of the Art Prof. Dr. Nassir Navab  Slides
Thu, Jan 28 CAMP Visualization and Medical Augmented Reality Christoph Bichlmeier, Matthias Wieczorek  Slides  Volume Rendering Integral Animation
Tue, Feb 2 CAMP Recovery and Monitoring of Surgical Workflow Prof. Dr. Nassir Navab  Slides  Text from p. 42
Thu, Feb 4 Invited Tracking, Tool Calibration and Navigated Nuclear Probes Thomas Wendler, SurgicEye GmbH  Slides
Tue, Feb 9 CAMP Demo Session at NARVIS-Lab (see below in field trip section, no lecture this day) Christoph Bichlmeier, Lejing Wang, Matthias Wieczorek -
Thu, Feb 11 Invited Motion analysis for epilepsy patients Prof. Dr. med. Soheyl Noachtar, Department of Neurology, Klinikum der Universität München -
Thu, Feb 18 - Exam in MW-1550 between 13:00 and 14:30 Nicolas Brieu, Tobias Reichl -
TBA - Repeat exam Nicolas Brieu, Tobias Reichl -

Field Trips

Within the CAMP lecture, we try to bring students into contact with industrial leaders providing computer-aided medical systems and software. Last year, we were able to provide two field trips, which we plan to arrange for this lecture as well.

Siemens AG Healthcare

Date: Thu, Nov 5, 2009

There will be a one-day field trip to Siemens AG Healthcare in Forchheim and Erlangen. A bus will be provided, bringing students from TUM Garching to the Siemens sites and back. The two Siemens sites serve as research and production sites for CT (Computed Tomography), AX (Angiography / X-Ray), MR (Magnetic Resonance Imaging), and SP (Special Products).

Preliminary schedule:

  • 06:45 sharp: Meet at the Garching parking lot
  • 07:00 - 09:00: Transfer to Siemens CT/AX, Forchheim
  • 09:15 - 10:45: Visit of CT (Computed Tomography)
    • CT physics, reconstruction and applications
    • Visit of the final assembly and testing bays
  • 10:50 - 12:15: Visit of AX (Angiography / X-Ray)
    • Angiography / X-ray systems (Alois Nöttling)
    • Demonstration of angiography / X-ray systems
    • Visit of the assembly and testing bays
  • 12:20 - 13:30: Lunch break at Siemens AX, then transfer to Siemens MR/SP
  • 13:45 - 15:30: Visit of MR (Magnetic Resonance Imaging)
    • Physics and applications of MR
    • Visit of the production line
    • Demo of a regular and functional MR session
  • 15:35 - 16:45: Visit of SP (Special Products)
    • Digital Breast Tomosynthesis (Anna Jerebko, PhD)
  • 17:00-19:00 Return transfer to Garching

Registration:

  • The field trip is free of charge.
  • To confirm the registration, a 10 Euros deposit is needed. It will be given back in the bus to Siemens.

BrainLab AG

Date: Tue, Jan 12, 2010

There will be a half-day field trip to BrainLAB AG. BrainLAB provides advanced radiotherapy, radiosurgery, neurosurgery, orthopedic and ENT surgery products, services, and software solutions worldwide. Students of the Biomedical Computing Master program are supposed to take part in another, but identical trip to BrainLAB with the lecture "Computer Assisted Trauma Surgery" on Jan 8 instead of this trip here!

We will meet directly at BrainLAB at 12:45pm sharp. We cannot provide a bus for this field trip, so you have to get there by yourselves (you can share cars or go by public transport). The address is BrainLAB AG, Kapellenstr. 12, 85622 Feldkirchen. For directions to BrainLAB have look at this instructions on the BrainLAB website.

Preliminary schedule:

  • 12:45 sharp: Meet at BrainLAB
  • 13:00 - 14:00: Company Tour
  • 14:00 - 15:00: Presentation: Oncology (Registration of Volume Data Sets)
  • 15:00 - 15:30: Coffee Break
  • 15:30 - 16:30: Product Presentation Ortho
  • 16:30 - open end: Questions

Registration:

  • Registration at the lecture, where we collect a signature and the deposit (see below) from you.
  • The field trip is free of charge.
  • To confirm the registration, a 10 Euros deposit is needed. It will be given back at the meeting point at BrainLAB.

NARVIS

Date: Tuesday, February 9th, 2010

Time: 3pm

Meeting point: Directly at NARVIS-Lab.

Follow the Narvis sign and/or these indications:

  • After entering the building (Nussbaumstr. 20) use the staircase on the left side. At the staircase you will find signs leading you to the lab
  • Inside the building look for Station 3, which is in the second floor. In the same floor you'll find the Narvis room (C2.06)

Visit: The visit will be done by Christoph Bichlmeier and Lejing Wang

Exam

  • Written exam
  • Time & Location: Thu, Feb 18 2010, 13:00 in MW 1550
  • Duration: 90 minutes
  • The repeat exam will be held on Tuesday 13.04.2010 from 15:30 to 17:00 in MW-0337.
  • There will no repeat exam in the summer term.

  • Materials allowed: "closed book". I.e. no materials will be allowed, with the exception of dictionaries.
  • The questions will be asked in English, answers may be given in either English or German.

Registration

  • Registration: via TUM online under German title "Informatikanwendungen in der Medizin" (IN2021)
  • Bring photo ID with you: either TUM student card with good photo, passport, or German ID card (Personalausweis)

Grading

  • Grading of the exam:
    • approx. 80% for detailed questions and problems to solve on the CAMP lectures
    • approx. 20% for more general questions on invited talks and field trips

Literature

Primary Literature

Secondary Literature


TeachingForm
Title: Computer Aided Medical Procedures
Professor: Prof. Dr. Nassir Navab
Tutors: Dr. Martin Groher, Tobias Reichl, Nicolas Brieu
Type: Lecture
Information: 4+0 SWS, 6 ECTS, Praktische Informatik, Vertiefungsfach, Tue 13:00-14:30, Thu 14:30-16:00
Term: 2009WiSe
Abstract: Computer science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors. This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes. There will be invited guests from the hospital Rechts der Isar and also medical companies in the Thursday classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.


Edit | Attach | Refresh | Diffs | More | Revision r1.109 - 17 Mar 2010 - 16:09 - NicolasBrieu

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