DzhoshkunShakir

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Dzhoshkun Ismail Shakir

Josh Dr. Dzhoshkun Ismail Shakir

I completed my PhD with a thesis entitled Intra-operative Nuclear Imaging Based on Positron-emitting Radiotracers. I am currently a post-doctoral research associate at University College London.

Affiliations:

TUM Graduate School of Information Science in Health (GSISH)
TUM Graduate School
Technische Universität München
Boltzmannstr. 11
D-85748 Garching bei München

Chair for Computer Aided Medical Procedures & Augmented Reality
Fakultät für Informatik
Technische Universität München
Boltzmannstr. 3
D-85748 Garching bei München

Nuklearmedizinische Klinik und Poliklinik (Dept. of Nuclear Medicine)
der Technischen Universität München
Klinikum rechts der Isar
Ismaninger Str. 22
D-81675 München

email:
skype: My status

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Current Research Projects

Intra-operative Imaging and Navigation for Minimal Invasiveness in Head and Neck Cancer

In medical collaboration with:
Prof. Dr. Markus Essler, Nuclear Medicine Dept., Klinikum rechts der Isar, TUM, Munich, Germany

Scientific Director: Nassir Navab, Sibylle Ziegler

Contact Person(s): Dzhoshkun Ismail Shakir

Intra-operative Imaging and Navigation for Guidance in Neurosurgical Procedures

Scientific Director: Nassir Navab, Sibylle Ziegler

Contact Person(s): Dzhoshkun Ismail Shakir

Intra-operative Beta Probe Surface Imaging and Navigation for Optimal Tumor Resection

Intra-operative Beta Probe Surface Imaging and Navigation for Optimal Tumor Resection

In medical collaboration with:
PD Dr. med. Alexander Drzezga, Nuclear Medicine Dept., Klinikum rechts der Isar, TUM, Munich, Germany

Scientific Director: Nassir Navab, Sibylle Ziegler

Contact Person(s): Dzhoshkun Ismail Shakir

In industrial collaboration with:
Dr. Farhad Daghighian, President, IntraMedical Imaging LLC, Los Angeles, CA, USA
Thomas Wendler, CTO, SurgicEye GmbH, Munich, Germany

Freehand SPECT for Sentinel Lymph Node Localization

Freehand SPECT for Sentinel Lymph Node Localization

In medical collaboration with:
Prof. Dr. Markus Schwaiger, Chefarzt, Nuklearmedicine, Klinikum rechts der Isar, TUM, Munich, Germany
PD Dr. Andreas Buck, Oberarzt, Nuklearmedicine, Klinikum rechts der Isar, TUM, Munich, Germany
Dr. Ken Herrmann, Assistenzarzt, Nuklearmedicine, Klinikum rechts der Isar, TUM, Munich, Germany
Prof. Dr. Marion Kiechle, Chefarzt, Gynaecology, Klinikum rechts der Isar, TUM, Munich, Germany
Dr. Stefan Paepke, Leitender Oberarzt, Gynaecology, Klinikum rechts der Isar, TUM, Munich, Germany
Dr. Andreas Schnelzer, Oberarzt, Gynaecology, Klinikum rechts der Isar, TUM, Munich, Germany
Dr. Alexandra Ehlerding, Assistenzarzt, Gynaecology, Klinikum rechts der Isar, TUM, Munich, Germany
Prof. Dr. Helmuth Friess, Chefarzt, Surgery, Klinikum rechts der Isar, TUM, Munich, Germany
Dr. Marc Martignoni, Oberarzt, Surgery, Klinikum rechts der Isar, TUM, Munich, Germany
Dr. Jakob Saeckl, Assistenzarzt, Surgery, Klinikum rechts der Isar, TUM, Munich, Germany
Prof. Dr. Stefano Fanti, Chefarzt, Nuklearmedicine, Asienda Ospidaliera S.Orsola-Malpighi, University of Bologna, Bologna, Italy
Dr. Ivan Santi, Assistenzarzt, Nuklearmedicine, Asienda Ospidaliera S.Orsola-Malpighi, University of Bologna, Bologna, Italy
Dr. Lorenzo Fantini, Assistenzarzt, Nuklearmedicine, Asienda Ospidaliera S.Orsola-Malpighi, University of Bologna, Bologna, Italy

Scientific Director: Nassir Navab, Sibylle Ziegler

Contact Person(s): TobiasLasser, Asli Okur; Philipp Matthies

In industrial collaboration with:
Dr. Joerg Traub, CEO, SurgicEye GmbH, Munich, Germany
Dr. Thomas Wendler, CTO, SurgicEye GmbH, Munich, Germany

Past Research Projects

Real-time fusion of ultrasound and gamma probe for navigated localization of malignancy

Real-time fusion of ultrasound and gamma probe for navigated localization of malignancy

In medical collaboration with:
PD Dr. Andreas Buck, Oberarzt, Nuklearmedicine, Klinikum rechts der Isar, TUM, Munich, Germany

Scientific Director: Nassir Navab

Contact Person(s): Nassir Navab

In industrial collaboration with:
Dr. Farhad Daghighian, President, IntraMedical Imaging LLC, Los Angeles, CA, USA
Thomas Wendler, CTO, SurgicEye GmbH, Munich, Germany

Publications

Let me know if you do not have access to my publications. I will be happy to send you digital copies.

A. Hartl, D. I. Shakir, T. Lasser, S. I. Ziegler, N. Navab
Detection models for freehand SPECT reconstruction
Physics in Medicine and Biology 60(3):1031-1046, 2015 (bib)
A. Okur, D. I. Shakir, P. Matthies, A. Hartl, M. Essler, S. I. Ziegler, T. Lasser, N. Navab
Freehand Tomographic Nuclear Imaging Using Tracked High-Energy Gamma Probes
Bildverarbeitung für die Medizin 2013 (BVM), Heidelberg, Germany, March 2013.
The original publication is available online at www.springerlink.com
(bib)
D. I. Shakir, A. Okur, A. Hartl, P. Matthies, M. Essler, S. I. Ziegler, T. Lasser, N. Navab
Towards Intra-operative PET for Head and Neck Cancer: Lymph Node Localization Using High-energy Probes
Proceedings of the 15th International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI), Nice, France, October 2012 (bib)
A. Hartl, D. I. Shakir, R. Kojchev, N. Navab, S. I. Ziegler, T. Lasser
Freehand SPECT reconstructions using look up tables
SPIE Medical Imaging Conference, February 4 - February 9 2012, San Diego, USA (bib)
D. I. Shakir, A. Hartl, F. R. Schneider, J. Pulko, S. I. Ziegler, N. Navab, T. Lasser
Two new ad-hoc models of detection physics and their evaluation for navigated beta probe surface imaging
Proceedings of SPIE Visualization, Image-Guided Procedures, and Modeling Conference, San Diego, CA, USA, February 2012 (bib)
D. I. Shakir, T. Lasser, A. Drzezga, S. I. Ziegler, N. Navab
Evaluation of Navigated Beta-Probe Surface Imaging on a Realistic 3D Phantom
Proceedings of the IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS-MIC), Valencia, Spain, October 2011 (bib)
D. I. Shakir, A. Hartl, N. Navab, S. I. Ziegler
Evaluation of an ad hoc model of detection physics for navigated beta-probe surface imaging
Proceedings of SPIE Visualization, Image-Guided Procedures, and Modeling Conference, Lake Buena Vista (Orlando Area), FL, USA, February 2011 (bib)
D. I. Shakir, N. Navab, S. I. Ziegler
Acquisition Model for Iterative Reconstruction of Navigated Beta-Probe Surface Images
Proceedings of the IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS-MIC), Knoxville, TN, USA, November 2010 (bib)
D. I. Shakir, J. Bieniarz, S. Pirsig, T. Wendler, N. Navab, S. I. Ziegler
A first study on biological feasibility of intraoperative control of tumor resection borders with navigated beta-probe surface imaging
Proceedings of the Annual Meeting of the Society of Nuclear Medicine (SNM), Salt Lake City, UT, USA, June 2010 (bib)
C. Özgür, J. Bieniarz, T. Lasser, S. I. Ziegler, N. Navab, T. Wendler
Phenomenological Models for intraoperative Positron Emission Surface Imaging using Handheld Probes
Proceedings of World Congress in Medical Physics and Biomedical Engineering (WC 2009), Munich, Germany, September 2009 (bib)
T. Wendler, T. Lasser, A. K. Buck, C. Özgür, M. Schwaiger, S. I. Ziegler, N. Navab
First in Vivo Use of a Fused Gamma Ultrasound System
Proceedings of RSNA 2008, Chicago, USA, December 2008 (bib)

Teaching Assistance

Summer Term 2012

Winter Term 2011

Winter Term 2010

Theses, SEPs, and IDPs under my (Co-)Supervision

Open

Finished

Personal

Quotes/Sayings I like

  • Turn your face to the sun, then the shadows fall behind you. -- Ugandan proverb
  • "Life is not measured by the number of breaths we take, but by the moments that take our breath away." -- Hilary Cooper
  • "War is not about who is right but who is left." -- *
  • "Nobody is more enslaved than those who falsely believe to be free." ("Niemand ist mehr Sklave, als der sich für frei hält, ohne es zu sein.") -- Johann Wolfgang von Goethe
  • "Ways arise via people traveling them." ("Wege entstehen dadurch, dass man sie geht.") -- Franz Kafka
  • Where small people have big shadows, the sun is about to set. -- Chinese proverb
  • "Great minds discuss ideas, average minds discuss events, small minds discuss people." -- Eleanor Roosevelt
  • "Death smiles at us all, but all a man can do is smile back." -- Marcus Aurelius Antoninus
  • "Never is a wish given to you without the strength and power to make it come true." ("Niemals wird dir ein Wunsch gegeben, ohne dass dir auch die Kraft verliehen wurde, ihn zu verwirklichen.") -- Richard Bach
  • "There are only two ways to live your life. One is as though nothing is a miracle. The other is as though everything is a miracle." -- Albert Einstein
  • "Wisdom is not the result of school education, but of the life-long attempt to obtain it." ("Weisheit ist nicht das Ergebnis der Schulbildung, sondern des lebenslangen Versuches, sie zu erwerben.") -- Albert Einstein
  • "I do not agree with what you have to say, but I'll defend to the death your right to say it." -- Voltaire
  • "The best way out is always through." -- Robert Frost

(* indicates I'm not aware of whom the quote belongs to)

UsersForm
Title: Dr.
Circumference of your head (in cm):  
Firstname: Dzhoshkun
Middlename: Ismail
Lastname: Shakir
Picture: GSISH3rdsymp_4face.jpg
Birthday:  
Nationality: Cosmopolitan
Languages: English, German, Spanish, Arab, Turkish
Groups: Surgical Workflow, Registration/Visualization, Reconstruction, Medical Imaging, Molecular Imaging, Computer-Aided Surgery
Expertise:  
Position: Scientific Staff
Status: Alumni
Emailbefore: shakir
Emailafter: in.tum.de
Room:  
Telephone:  
Alumniactivity: Research Associate at University College London
Defensedate:  
Thesistitle: Intra-operative Nuclear Imaging Based on Positron-emitting Radiotracers
Alumnihomepage: http://cmictig.cs.ucl.ac.uk/people/research-staff/57-dzhoshkun-ismail-shakir
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