Dzhoshkun Ismail Shakir

Dr. Dzhoshkun Ismail Shakir I completed my PhD with a thesis entitled Intra-operative Nuclear Imaging Based on Positron-emitting Radiotracers. I am currently a post-doctoral research associate at University College London. Affiliations: TUM Graduate School of Information Science in Health (GSISH) TUM Graduate School Technische Universität München Boltzmannstr. 11 D-85748 Garching bei München Chair for Computer Aided Medical Procedures & Augmented Reality Fakultät für Informatik Technische Universität München Boltzmannstr. 3 D-85748 Garching bei München Nuklearmedizinische Klinik und Poliklinik (Dept. of Nuclear Medicine) der Technischen Universität München Klinikum rechts der Isar Ismaninger Str. 22 D-81675 München email: skype:

Current Research Projects

Intra-operative Imaging and Navigation for Minimal Invasiveness in Head and Neck Cancer In medical collaboration with: Prof. Dr. Markus Essler, Nuclear Medicine Dept., Klinikum rechts der Isar, TUM, Munich, Germany Scientific Director: Nassir Navab, Sibylle Ziegler Contact Person(s): Dzhoshkun Ismail Shakir

Intra-operative Imaging and Navigation for Guidance in Neurosurgical Procedures Scientific Director: Nassir Navab, Sibylle Ziegler Contact Person(s): Dzhoshkun Ismail Shakir

Intra-operative Beta Probe Surface Imaging and Navigation for Optimal Tumor Resection In medical collaboration with: PD Dr. med. Alexander Drzezga, Nuclear Medicine Dept., Klinikum rechts der Isar, TUM, Munich, Germany Scientific Director: Nassir Navab, Sibylle Ziegler Contact Person(s): Dzhoshkun Ismail Shakir In industrial collaboration with: Dr. Farhad Daghighian, President, IntraMedical Imaging LLC, Los Angeles, CA, USA Thomas Wendler, CTO, SurgicEye GmbH, Munich, Germany

Freehand SPECT for Sentinel Lymph Node Localization In medical collaboration with: Prof. Dr. Markus Schwaiger, Chefarzt, Nuklearmedicine, Klinikum rechts der Isar, TUM, Munich, Germany PD Dr. Andreas Buck, Oberarzt, Nuklearmedicine, Klinikum rechts der Isar, TUM, Munich, Germany Dr. Ken Herrmann, Assistenzarzt, Nuklearmedicine, Klinikum rechts der Isar, TUM, Munich, Germany Prof. Dr. Marion Kiechle, Chefarzt, Gynaecology, Klinikum rechts der Isar, TUM, Munich, Germany Dr. Stefan Paepke, Leitender Oberarzt, Gynaecology, Klinikum rechts der Isar, TUM, Munich, Germany Dr. Andreas Schnelzer, Oberarzt, Gynaecology, Klinikum rechts der Isar, TUM, Munich, Germany Dr. Alexandra Ehlerding, Assistenzarzt, Gynaecology, Klinikum rechts der Isar, TUM, Munich, Germany Prof. Dr. Helmuth Friess, Chefarzt, Surgery, Klinikum rechts der Isar, TUM, Munich, Germany Dr. Marc Martignoni, Oberarzt, Surgery, Klinikum rechts der Isar, TUM, Munich, Germany Dr. Jakob Saeckl, Assistenzarzt, Surgery, Klinikum rechts der Isar, TUM, Munich, Germany Prof. Dr. Stefano Fanti, Chefarzt, Nuklearmedicine, Asienda Ospidaliera S.Orsola-Malpighi, University of Bologna, Bologna, Italy Dr. Ivan Santi, Assistenzarzt, Nuklearmedicine, Asienda Ospidaliera S.Orsola-Malpighi, University of Bologna, Bologna, Italy Dr. Lorenzo Fantini, Assistenzarzt, Nuklearmedicine, Asienda Ospidaliera S.Orsola-Malpighi, University of Bologna, Bologna, Italy Scientific Director: Nassir Navab, Sibylle Ziegler Contact Person(s): TobiasLasser, Asli Okur; Philipp Matthies In industrial collaboration with: Dr. Joerg Traub, CEO, SurgicEye GmbH, Munich, Germany Dr. Thomas Wendler, CTO, SurgicEye GmbH, Munich, Germany

Past Research Projects

Real-time fusion of ultrasound and gamma probe for navigated localization of malignancy In medical collaboration with: PD Dr. Andreas Buck, Oberarzt, Nuklearmedicine, Klinikum rechts der Isar, TUM, Munich, Germany Scientific Director: Nassir Navab Contact Person(s): Nassir Navab In industrial collaboration with: Dr. Farhad Daghighian, President, IntraMedical Imaging LLC, Los Angeles, CA, USA Thomas Wendler, CTO, SurgicEye GmbH, Munich, Germany

Publications

Let me know if you do not have access to my publications. I will be happy to send you digital copies.

	A. Hartl, D. I. Shakir, T. Lasser, S. I. Ziegler, N. Navab Detection models for freehand SPECT reconstruction Physics in Medicine and Biology 60(3):1031-1046, 2015 (bib)
	A. Okur, D. I. Shakir, P. Matthies, A. Hartl, M. Essler, S. I. Ziegler, T. Lasser, N. Navab Freehand Tomographic Nuclear Imaging Using Tracked High-Energy Gamma Probes Bildverarbeitung für die Medizin 2013 (BVM), Heidelberg, Germany, March 2013. The original publication is available online at www.springerlink.com (bib)
	D. I. Shakir, A. Okur, A. Hartl, P. Matthies, M. Essler, S. I. Ziegler, T. Lasser, N. Navab Towards Intra-operative PET for Head and Neck Cancer: Lymph Node Localization Using High-energy Probes Proceedings of the 15th International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI), Nice, France, October 2012 (bib)
	A. Hartl, D. I. Shakir, R. Kojchev, N. Navab, S. I. Ziegler, T. Lasser Freehand SPECT reconstructions using look up tables SPIE Medical Imaging Conference, February 4 - February 9 2012, San Diego, USA (bib)
	D. I. Shakir, A. Hartl, F. R. Schneider, J. Pulko, S. I. Ziegler, N. Navab, T. Lasser Two new ad-hoc models of detection physics and their evaluation for navigated beta probe surface imaging Proceedings of SPIE Visualization, Image-Guided Procedures, and Modeling Conference, San Diego, CA, USA, February 2012 (bib)
	D. I. Shakir, T. Lasser, A. Drzezga, S. I. Ziegler, N. Navab Evaluation of Navigated Beta-Probe Surface Imaging on a Realistic 3D Phantom Proceedings of the IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS-MIC), Valencia, Spain, October 2011 (bib)
	D. I. Shakir, A. Hartl, N. Navab, S. I. Ziegler Evaluation of an ad hoc model of detection physics for navigated beta-probe surface imaging Proceedings of SPIE Visualization, Image-Guided Procedures, and Modeling Conference, Lake Buena Vista (Orlando Area), FL, USA, February 2011 (bib)
	D. I. Shakir, N. Navab, S. I. Ziegler Acquisition Model for Iterative Reconstruction of Navigated Beta-Probe Surface Images Proceedings of the IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS-MIC), Knoxville, TN, USA, November 2010 (bib)
	D. I. Shakir, J. Bieniarz, S. Pirsig, T. Wendler, N. Navab, S. I. Ziegler A first study on biological feasibility of intraoperative control of tumor resection borders with navigated beta-probe surface imaging Proceedings of the Annual Meeting of the Society of Nuclear Medicine (SNM), Salt Lake City, UT, USA, June 2010 (bib)
	C. Özgür, J. Bieniarz, T. Lasser, S. I. Ziegler, N. Navab, T. Wendler Phenomenological Models for intraoperative Positron Emission Surface Imaging using Handheld Probes Proceedings of World Congress in Medical Physics and Biomedical Engineering (WC 2009), Munich, Germany, September 2009 (bib)
	T. Wendler, T. Lasser, A. K. Buck, C. Özgür, M. Schwaiger, S. I. Ziegler, N. Navab First in Vivo Use of a Fused Gamma Ultrasound System Proceedings of RSNA 2008, Chicago, USA, December 2008 (bib)

Teaching Assistance

Summer Term 2012

• Praktikum Project Management and Software Development for Medical Applications

Winter Term 2011

• Programmierpraktikum Project Management and Software Development for Medical Applications

Winter Term 2010

• Programmierpraktikum Image Processing, Computer Graphics and Visualization using C++

Theses, SEPs, and IDPs under my (Co-)Supervision

Open

• IDP/Klinisches Anwendungsprojekt Radiation exposure and protection in radionuclide-guided surgery by Radu Diaconescu

Finished

• SEP Robust Surface Reconstruction using IR-Laser-Pointer by Asli Okur

Personal

Quotes/Sayings I like

• Turn your face to the sun, then the shadows fall behind you. -- Ugandan proverb
• "Life is not measured by the number of breaths we take, but by the moments that take our breath away." -- Hilary Cooper
• "War is not about who is right but who is left." -- *
• "Nobody is more enslaved than those who falsely believe to be free." ("Niemand ist mehr Sklave, als der sich für frei hält, ohne es zu sein.") -- Johann Wolfgang von Goethe
• "Ways arise via people traveling them." ("Wege entstehen dadurch, dass man sie geht.") -- Franz Kafka
• Where small people have big shadows, the sun is about to set. -- Chinese proverb
• "Great minds discuss ideas, average minds discuss events, small minds discuss people." -- Eleanor Roosevelt
• "Death smiles at us all, but all a man can do is smile back." -- Marcus Aurelius Antoninus
• "Never is a wish given to you without the strength and power to make it come true." ("Niemals wird dir ein Wunsch gegeben, ohne dass dir auch die Kraft verliehen wurde, ihn zu verwirklichen.") -- Richard Bach
• "There are only two ways to live your life. One is as though nothing is a miracle. The other is as though everything is a miracle." -- Albert Einstein
• "Wisdom is not the result of school education, but of the life-long attempt to obtain it." ("Weisheit ist nicht das Ergebnis der Schulbildung, sondern des lebenslangen Versuches, sie zu erwerben.") -- Albert Einstein
• "I do not agree with what you have to say, but I'll defend to the death your right to say it." -- Voltaire
• "The best way out is always through." -- Robert Frost

(* indicates I'm not aware of whom the quote belongs to)