Intra-operative Imaging & Visualization
by
Nassir Navab & invited guests
3 SWS
Praktische Informatik
Vertiefung
4 ECTS
Preliminary discussion for the exam: July 07, 2005 2:15-2:30
Exam: Tuesday, July 19, 2005 2:00-3:30 (room to be announced)
Time & Location
- Tuesday 2:00-2:45pm, MI 00.13.009A
- Thursday 2:15-3:45pm, MI 00.04.011 (HS 2)
- Exam: Tuesday, July 19, 2005 10:00-11:30 (03.13.010)
Abstract
Computer Science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to development and deployment of medical solutions.
Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors. This course on Intra-operative imaging and visualization exposes the students to the challenges of building the operating rooms of future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data.
There will be invited guests for the hospital Rechts der Isar in the Thursday class. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced soon.
Course Schedule
Attention: 
Old slides have been either removed or password protected. Please contact in order to get them.
| Date | Content | Conducted by  | Slides | Further Material |
| May 31, 2005 | Medical Image Registration I | Wolfgang Wein & Prof. N. Navab | slides | |
| June 07, 2005 | Medical Image Registration II | Wolfgang Wein & Prof. N. Navab | | |
| June 14, 2005 | Medical Image Registration III | Wolfgang Wein & Prof. N. Navab | slides | |
| June 21, 2005 | Medical Image Registration IV | Wolfgang Wein & Prof. N. Navab | slides | |
| May 10, 2005 | Basics of 3D Computer Vision: Calibration, Estimation & Tracking | Tobias Sielhorst & Prof. N. Navab | slides (Transformations in 3D) slides (Rotations and Quaternions) | |
| July 07, 2005 | Advanced In-situ Visualization | Tobias Sielhorst & Prof. Dr. Nassir Navab | slides | |
| April 28, 2005 | Physical Properties of Radiation with Applications in X-ray & Radiation Therapy | Prof. P. Kneschaurek (Klinik und Poliklinik für Strahlentherapie und Radiologische Onkologie, Klinikum rechts der Isar) | slides | |
| April 19, 2005 | Introduction and Motivation for Intraoperative Imaging and Visualization | Prof. N. Navab | slides | |
| April 21, 2005 | History of Radiology: From X-ray to Medical Augmented Reality | Prof. N. Navab | slides | |
| May 03, 2005 | Basics of 3D Computer Vision: Camera and Projections | Prof. N. Navab | slides | MATLAB_Workshop.pdf Exercises.pdf bg-mri.jpg transformImage.m solutionFiles.zip |
| July 14, 2005 | Conclusion | Prof. N. Navab | | |
| May 19, 2005 | Mathematical Basics of Computer Tomography Reconstruction | Prof. Dr. R. Lasser (Institute of Biomathematics and Biometry, GSF & Department of Mathematics, TUM) | script | |
| June 09, 2005 | Basics of Ultrasound Imaging and 4D Ultrasound | M. Schreckenberg (TomTec Imaging Systems GmbH) | slides | |
| April 26, 2005 | Exemplary Applications for Computer Aided Surgery | Joerg Traub & Prof. N. Navab | slides | |
| July 12, 2005 | Navigation and Tracking | Joerg Traub & Prof. N. Navab | slides | |
| June 16, 2005 | Basics of Nuclear Medicine (PET, SPECT, and Introperative Probes) | Dr. S. Ziegler (Nuklearmedizin Rechts der Isar) | | |
| June 02, 2005 | Basics of Magnetic Resonance Imaging | Dr. S. Nekolla (Nuklearmedizin Rechts der Isar) | slides | |
| May 12, 2005 | Role of Medical Images for Diagnosis | Dr. M. Dobritz (Institut für Röntgendiagnostik, Klinikum rechts der Isar) | slides | the slides have a size of 35MB |
| June 30, 2005 | Cone-Beam Reconstruction | Dr. G. Lauritsch (Siemens AG, Medical Solutions, AX) | slides | |
| June 28, 2005 | Medical Image Segmentation Overview I | Andreas Keil & Prof. Dr. Nassir Navab | | |
| July 05, 2005 | Medical Image Segmentation Overview II | Andreas Keil & Prof. Dr. Nassir Navab | slides | |
| May 24, 2005 | Field Trip to BrainLAB | | | |
| June 23, 2005 | Siemens Medical Field Trip | | | |
Field Trips
BrainLAB Tuesday, May 24, 2005
There will be a half day field trip to BrainLAB on May 24. The presentations will start at 2pm at BrainLAB. Meeting point will be either 1:15 in front of the library in the MI faculty building of TUM in Garching or directly 1:55 at BrainLAB at the entrace. If you have further questions contact
Joerg Traub.
Siemens Medical Field Trip, June 23, 2005
There was a one day field trip to Siemens Medical on June 23. In order to further improve this trip as well as the lecture, we would be greatful if all the participants would fill in
this short questionnaire about the trip. If you have further questions contact
Andreas Keil.
Literature
- [CARS] Various Proceedings of CARS (Computer Assisted Radiology and Surgery - International Congress and Exhibition)
- [CAS] Various Volumes of Computer Aided Surgery
- [Grimson1999] W. Eric L. Grimson, Ron Kikinis, Ferenc A. Jolesz, Peter McL. Black, Image-Guided Surgery, Scientific American, 280(6) pp.62-69. 1999
- [Hanjnal2001] J. V. Hajnal, D. L.G. Hill, D. J. Hawkes, Medical Image Registration ,CRC Press, Biomedical Engineering Series. 2001
- [Hardley2004] Richard Hartley, Andrew Zisserman, Multiple View Geometry in Computer Vision, Cambridge University Press, 2nd edition. 2004
- [Kak2001] Avinash C. Kak, Malcolm Slaney, Principles of Computerized Tomographic Imaging, SIAM Society for Industrial & Applied Mathematics. 2001 (online version)
- [MICCAI] Various Proceedings of MICCAI (International Society and Conference Series on Medical Image Computing and Computer-Assisted Intervention)
- [Mueller1998] K. Mueller, Fast and accurate three-dimensional reconstruction from cone-beam projection data using algebraic methods, PhD dissertation, The Ohio State University, June, 1998
- [Peters2000] Terry M. Peters, Image-guided surgery: From X-rays to Virtual Reality, Comput Methods Biomech Biomed Engin. 2000;4(1):27-57
- [TMI] Various IEEE Transactions on Medical Imaging
- [Natter1986] F. Natterer, The Mathematics of Computerized Tomography, John Wiley and Sons Ltd. 1986