TeachingSs18PMSD

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Lab Course / Praktikum: Project Management and Software Development for Medical Applications

by Prof. Nassir Navab
Team: Beatrice Lentes, Javier Esteban, Mahdi Saleh
Type: Master Practical Course Module IN2106
SWS: 6
Programs: Biomedical Computing (Master), Informatics (Master)
ECTS: 10 Credits

Preliminary Meeting ("Vorbesprechung"): Monday, February 5th - 18:00 to 18:300 in the CAMP Seminar Room 03.13.010
Further Meetings: See the schedule below.

This course in TUMOnline
The course will be conducted in English.

Announcements

  • 10.04.2018: new.gif Projects have been assigned. Please contact your supervisors asap.
  • 09.04.2018: Project proposals published.
  • 23.01.2018: Preliminary meeting date scheduled.
  • 17.01.2018: Course website created.

Registration

Please register in the TUM matching system for the course registration. Keep in mind that your chances to be assigned to the course increase if you give it a higher rank in your choices. For further details about how the matching system works and its schedule please check this website.

General content

This Lab Course is intended to teach the basic concepts of software project management and development for medical applications. You will be confronted with a brief introduction to software project management concepts such as requirement analysis, software design, coding guidelines and unified modeling language (UML). In addition, topics like software version control, deployment engineering and testing will be explored. You will be assigned a medical software project to apply the mentioned concepts in a real-life scenario with clinical, industrial or research partners.

Project Proposals

In this lab course, students work on clinical software projects and find solutions for problems in the field of medical applications. The student's workload should be around 8-10 hours per week for a period of 3 months on the assigned project (10 ECTS course).

Each project is expected to have one contact person (supervisor) who should be available for regular updates or if the student needs any help. In addition, the supervisors are kindly invited to participate in the student presentations (Requirements, Intermediate, Final) taking place at the CAMP chair. Each project supervisor will decide on 50% of the grade based on the student’s performance in the project. The other 50% will be decided upon by the class coordinators, based on the quality of project management and presentation skills of the student.

The project proposal should give a short introduction into the context and describe the most important aspects and expected outcome of the project. Furthermore it should clearly state the required (and optional) skills (programming language, experience with certain libraries etc.).

If you have a suitable project, preferably with a clinical or industrial partner, you are kindly invited to fill out the project proposal template and send it to Beatrice Lentes (beatrice.lentes@tum.de) as soon as possible.
The deadline for proposal submission is Sunday, March 18th, 2018.

Prerequisites

This course requires basic knowledge of C++ or similar OO programming language. The concepts of OO programming and other concepts as conducted in the Introduction to CS lecture are assumed.

Schedule

The schedule is preliminary and still subject to change. Please check the course website regularly!
Date - Time Place Topic Conducted by Materials
Monday, 05.02.2018 - 18:00-18:30 03.13.010 Preliminary Meeting All course tutors Preliminary Meeting Slides
Project Examples
09.02. to 14.02.2018 TUM Matching platform Registration Students Matching FAQ
Monday, 09.04.2018 - 14:00-17:30 03.13.010 Introduction, Project Announcements (attendance mandatory) All course tutors Introduction Slides
Monday, 09.04.2018 - until 23:59 E-mail to Beatrice Lentes Students required to indicate project preferences Students Student Application Template
Tuesday, 20.04.2018 E-mail / course website Project assignments published Beatrice Lentes  
Monday, 16.04.2018 - 14:00-17:30 03.13.010 Lecture I: Presentation Tips & Project Management, Lecture II: Software Engineering - UML Beatrice, Javier Presentation Rules and Tips

Project Management

UML
Monday, 30.04.2018 - 14:00-17:30 03.13.010 Hands-on Presentation Techniques (attendance mandatory)    
Monday, 07.05.2018 - 14:00-17:30 03.13.010 Requirements (Kick Off) Presentations (attendance mandatory) All course tutors  
Monday, 07.05.2018 - 23:59 Link will be provided Presentation slides upload (Kick Off) Students  
Monday, 28.05.2018 - 14:00-16:00 03.13.010 Lecture III: Documentation, Testing & Integration Strategy Mahdi Saleh  
Monday, 11.06.2018 - 14:00-17:30 03.13.010 Intermediate Presentations (attendance mandatory) All course tutors  
Monday, 11.06.2018 - 23:59 Link will be provided Presentation slides upload (Intermdediate) Students  
Monday, 09.07.2018 - 14:00-17:30 03.13.010 Final Presentations Vol. 1 (attendance mandatory) All course tutors  
Thursday, 12.07.2018 - 16:00-18:30 03.13.010 Final Presentations Vol. 2 (attendance mandatory) All course tutors  
Thursday, 12.07.2018 - 23:59 Link will be provided Presentation slides upload (Final) Students  


Templates

CAMP presentation slides (PowerPoint) camp-tum-jhu-slides.potx

CAMP presentation slides (Latex) LaTeX_presentation_template.zip

Student application template application.docx

Project proposal template proposal.docx

Presentation Schedules

Project Requirements Presentations

5 minutes slot for each presentation (plus 2 minutes for questions). We encourage students to practice their presentation w.r.t. pace and time. In order to train compliance with speaking times, your presentation will be interrupted after 5 minutes 30 seconds, no exceptions made.

Show Schedule

Intermediate Presentations Schedule

7 minutes slot for each presentation (plus 3 minutes for questions). We encourage students to practice their presentation w.r.t. pace and time. In order to train compliance with speaking times, your presentation will be interrupted after 7 minutes 30 seconds, no exceptions made.

Show Schedule

Final Presentations Schedule

7 minutes slot for each presentation (plus optional an additional 4 min live demo and plus 3 minutes for questions). We encourage students to practice their presentation w.r.t. pace and time. In order to train compliance with speaking times, your presentation will be interrupted after 7 minutes 30 seconds (resp. 11 min 30 sec with demo), no exceptions made.

Day Slot Student Project Title
Monday, 09.07.2018 01 Matthieu Real-time Gaze Estimation
Monday, 09.07.2018 02 Mohamad Development of a Brain-Computer Interface for Neurorehabilitation of Stroke Patients
Monday, 09.07.2018 03 Gloria Optimization of Photonic Microstructures for Biofluid Analysis with Artificial Intelligence and Machine Learning
Monday, 09.07.2018 15 Min. Break
Monday, 09.07.2018 04 Henrique Real-time 3D Human Pose Estimation from monocular RGB Camera
Monday, 09.07.2018 05 Georgios Facet Joint Segmentation in US 3D volumes
Thursday, 12.07.2018 01 Shyam CASA: Carotid Artery Shear Assessment
Thursday, 12.07.2018 02 Afshar VirtUS?: Virtual Ultrasound
Thursday, 12.07.2018 03 Rameshwara Ultrasound Anatomy Classification
Thursday, 12.07.2018 04 Sri 3d Joint Motion Visualization for Sports or Physical Therapy
Thursday, 12.07.2018 15 Min. Break
Thursday, 12.07.2018 05 Arturo Live Avatar of 3D Human Pose Tracking
Thursday, 12.07.2018 06 Izabela DeepMRF
Thursday, 12.07.2018 07 Alok Best of both worlds: Using Deep Learning and Variational Methods for Depth super-resolution

Available Projects

Projects will be announced in due time and presented during the introductory meeting. Please communicate a selection of 3 choices, each with an explanation (ca. 5 sentences) for why you want to work on this project and how you meet the requirements specified in the project proposal by 09.04.2018, 23.59 CEST. Use the Application Template provided under Templates.



Project ID Student Project Title Supervisor Additional Material
01 Izabela Horvath DeepMRF? Dr. Pedro Gomez Project Description
02 Alok Verma Best of both worlds: Using Deep Learning and Variational Methods for Depth super-resolution Dr. Yvain Queau Project Description
03 Sri Divya Vajapeyajula 3d Joint Motion Visualization for Sports or Physical Therapy Mahdi Saleh Project Description
04 Arturo Diaz Coca Live Avatar of 3D Human Pose Tracking Mahdi Saleh Project Description
05 Florian Hinterwimmer Object Labeling and Segmentation in Clinical Multispectral Optoacoustic Images Dominik Jüstel, Prof. Vasilis Ntziachristos Project Description
06 Mohamad Atayi Development of a Brain-Computer Interface for Neurorehabilitation of Stroke Patients Stefan Ehrlich Project Description
07 Henrique Rodrigues Orefice Real-time 3D Human Pose Estimation from monocular RGB Camera Felix Bork, Dr. Federico Tombari Project Description
08 Rameshwara G. N. Prasad Ultrasound Anatomy Classification Walter Simson Project Description
09 Shyam Srinivasan CASA: Carotid Artery Shear Assessment Dr. Guillaume Zahnd Project Description
12 Matthieu Hongtao Zhang Real-time Gaze Estimation Benjamin Busam Project Description
14 Gloria Zörnack Optimization of Photonic Microstructures for Biofluid Analysis with Artificial Intelligence and Machine Learning Lorenz Sykora Project Description
16 Georgios Tsekas Facet Joint Segmentation in US 3D volumes Javier Esteban Project Description
17 Afshar Kakaei VirtUS: Virtual Ultrasound Dr. Guillaume Zahnd Project Description


Passing Requirements

  • Attendance and active participation in ALL presentation and hands-on meetings, in particular questions after each presentation.
  • Presence during the lectures is not mandatory but highly recommended.
  • Submission of all assignments in time.
  • Presentation of your final assignment results.
  • Upload of the presentation slides on the day of your presentation. Details will be provided in the introduction.

Literature/Resources

C++

Python

Documenting your code

  • Doxygen, a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.

MS Visual Studio (2015)

Github

Qt

Other useful tools and libraries


TeachingForm
Title: Project Management and Software Development for Medical Applications
Professor: Prof. Nassir Navab
Tutors: Beatrice Lentes, Javier Esteban, Mahdi Saleh
Type: Praktikum
Information: 6 SWS, 10 ECTS Credits (Module IN2106)
Term: 2018SoSe
Abstract:  


Edit | Attach | Refresh | Diffs | More | Revision r1.34 - 09 Jul 2018 - 08:44 - BeatriceLentes

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