OliverSchoppe

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Oliver Schoppe, M.Sc.

Image-Based Biomedical Modeling Group (Prof. Dr. Bjoern Menze)
PhD candidate

Oliver Schoppe

Deep Learning for clinical and pre-clinical research
Deep learning for clinical and pre-clinical research Image credits: NVIDIA;

Office
Center for Translational Cancer Research (TranslaTUM)
Klinikum rechts der Isar, Trogerstr 1, 81675 Munich


(I always respond; if not, your email got stuck in a spam filter)

Research Focus
My research interest is motivated by the tremendous potential impact of making Deep Learning-based computer vision applicable in everyday settings in clinical and pre-clinical research. This entails developing deep convolutional networks for detection, localization, and segmentation tasks in medical images of various modalities. Ensuring applicability in everyday settings typically requires elaborate strategies to deal with limited availability of annotated data, for instance making use of Transfer Learning or Data Augmentation.
I cooperate with Ali Ertürk's Lab at the Institute for Stroke and Dementia Research at Klinikum Großhadern. This work comprises research questions like automatic image segmentation and classification problems for general 3D anatomy, but also specific questions in the fields of stroke, dementia, and cancer.

Projects for students

We are inviting applications for several exciting research opportunities for Master students with our group. Please also feel free to reach out if you are interested in a Bachelor thesis, research project, etc. The projects are intended for students in Informatics, Electrical Engineering, or related fields. Please refer to the project descriptions below for more detailed information.

We expect all students to have:
  • Prior theoretical knowledge on deep learning
  • Some practical experience with deep learning (PyTorch or TensorFlow)
  • Good Python coding skills
  • Ideally experience in computer vision / medical image analysis

Deep learning-based tumor detection in 3D scans

Deep transfer learning for 3D brain vessel segmentation

Deep learning-based tracing of single neurons and neural pathways

Distributed deep learning for large-scale medical image analysis

Deep learning-based 3D segmentation of prostate lesions

Deep learning-based multi-organ segmentation for MRI & CT

Deep learning-based multi-organ segmentation for 3D microscopy

Analysis of CT scans from automotive OEM with deep learning

Deep learning for multi-channel microscopy

Image credits: Ali Ertürk; Anjany Sekuboyina; Fox; BMW AG;

Background

  • since 2018: Ph.D. candidate at IBBM group (TU Munich) with Prof. Dr. Bjoern Menze
  • since 2015: Consultant with McKinsey & Co., Inc. (currently on educational leave)
  • 2015: M.Sc. in Electrical Engineering and Information Technology from TU Munich
  • 2014-15: Research stays at Oxford University (neuroscience, artificial neural networks)
  • 2013: B.Sc. in Electrical Engineering and Information Technology from TU Munich
  • 2011-12: Visiting student at Harvard University & MIT (neuroscience, business, law)

Publications

* shared first authorship
Google Scholar profile

Code



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