TeachingWiSe2014CAMPONE

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Computer Aided Medical Procedures (CAMP) - IN2021

  Lecture by Prof. Dr. Nassir Navab & invited speakers.

Module IN2021: 4+0 SWS, 6 ECTS, Praktische Informatik, Wahlfach

Time & Location:

Announcements:

  • Grades with the repeat exam are out.
  • Final Grades are out. Note that 'X' means the student didn't attend the final exam. Please have a look and decide whether you want to register for the repeat exam. The repeat exam will be on 14th Apr. 2015, at 17:30 - 19:00 MW 1801, Ernst-Schmidt-Hörsaal (5508.01.801).
  • Midterm results is out. Please note that the max. number of points is 33.
  • Time and Location of the final exam: Time: 3rd Feb. 2015, 11:30 - 13:30; Location: Interims Hörsaal 2 (5620.01.102). The exam includes questions that require to write down the detailed answers and multiple choice questions.
  • Registration for the Zeiss trip will be open on 14th and 16th Jan. Please check below for details.

Abstract

Computer science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors.

This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes.

There will be invited guests from the hospital Rechts der Isar and also medical companies in the classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.

Here is a rough overview of the topics that were presented in last year's lecture:

  • Introduction
  • Computer-Aided Surgery and Exemplary Applications
  • Image Processing and Segmentation
  • Registration
  • Basics of Tracking Technologies
  • Visualization and Medical Augmented Reality
  • Surgical Workflow - Analysis, Monitoring and Applications
  • Basics of Radiography (X-Ray, CT etc.) - Physical Properties, Applications, Radiation Therapy
  • Magnetic Resonance Imaging - Basics, Advanced MRI and Applications
  • Ultrasound Imaging
  • Nuclear Medicine (PET/SPECT)

For a more detailed overview, see last year's lecture.

Prerequisites:

  • Interest in medical image processing

Benefits:

  • Knowledge in medical image acquisition / image modalities
  • Deep insight into medical image computing

This lecture is going to be succeeded by "Computer Aided Medical Procedures 2" (see summer term 2014 CAMP 2 lecture page) (2+2 SWS, 6 ECTS) in the next summer term (which is recommended, but not obligatory).

Course Schedule

A password is needed to access the lecture slides and materials. This will be announced in the first lecture.

Week Type Topic Lecturer Material
Tue, 07/10/14 CAMP INTRODUCTION Prof. Dr. Navab Introduction
Thu, 09/10/14 CAMP BRIEF HISTORY RADIOLOGY Prof. Dr. Navab Brief History Radiology
Tue, 14/10/14 CAMP INTRODUCTION TO IMAGE PROCESSING Dr. Wang Introduction to Image Processing
Thu, 16/10/14 CAMP CT RECONSTRUCTION 1 Dr. Wein CT Reconstruction 1
Tue, 21/10/14 Trip BrainLAB AG -  
Thu, 23/10/14 CAMP CT RECONSTRUCTION 2 Dr. Wein CT Reconstruction 2
Tue, 28/10/14 CAMP MEDICAL ULTRASOUND 1 Dr. Wein  
Thu, 30/10/14 CAMP MEDICAL ULTRASOUND 2 Dr. Wein Medical Ultrasound 1+2
Tue, 04/11/14 CAMP INTENSITY BASED REGISTRATION Prof. Dr. Navab Intensity Based Registration
Thu, 06/11/14 CAMP FEATURE BASED REGISTRATION Prof. Dr. Navab
Feature Based Registration
Tue, 11/11/14 CAMP 3D FREEHAND & INTERVENTIONAL ULTRASOUND Dr. Wein 3D Freehand & Interventional US advanced_segmentation.zip
Thu, 13/11/14 Invited 2D/3D REGISTRATION & VALIDATION Prof. Dr. Pernus 2D/3D Registration methods

Validation of 3D/2D
registration methods
Tue, 18/11/14 CAMP DEFORMABLE REGISTRATION Prof. Dr. Navab Deformable Registration (Updated)
Thu, 20/11/14 CAMP COMPUTER-AIDED SURGERY AND NAVIGATION Dr. Fallavollita Computer Assisted Surgery and Navigation
Tue, 25/11/14 Mid-term exam Midterm Exam at 17:30 - 18:30 in mw 1801, ernst-schmidt-hoersaal (5508.01.801)   Information for Mid-term Exam
Thu, 27/11/14 Invited MOTION ANALYSIS OF EPILEPSY Dr. Vollmar Motion Analysis of Epilepsy
Tue, 02/12/14 CAMP MEDICAL AUGMENTED REALITY STATE OF THE ART Prof. Dr. Navab Medical AR State of the Art
Tue, 09/12/14 CAMP Nuclear Medicine 1 Dr. Frisch Nuclear Medicine 1
Thu, 11/12/14 CAMP MULTI-MODAL BRAIN IMAGE ANALYSIS Prof. Dr. Menze MULTI-MODAL BRAIN IMAGE ANALYSIS
Tue, 16/12/14 Invited MRI-BASICS AND APPLICATIONS Dr. Nekolla MRI Basics and Applications
Thu, 18/12/14 Invited MRI-Advanced Dr. Nekolla Advanced MRI
Tue, 23/12/14   no lectures (christmas)    
Thu, 08/01/15 CAMP Nuclear Medicine 2 Dr. Frisch Nuclear Medicine 2
Tue, 13/01/15 Trip SIEMENS AG HEALTHCARE -  
Thu, 15/01/15 Invited UNIVERSITY START-UP EXPERIENCE IN INTRAOP IMAGING & NAVIGATION Dr. Joerg Traub Medical Imaging Entrepreneurship
Tue, 20/01/15 Invited PHYSICS OF RADIATION Prof. Dr. Wilkens Physics of Radiation
Thu, 22/01/15 TRIP Zeiss -  
Tue, 27/01/15 CAMP Segmentation 1 Dr. Baust  Segmentation part I
 basic_segmentation.zip
Thu, 29/01/15 CAMP Segmentation 2 Dr. Baust  Segmentation part II
 advanced_segmentation.zip
Tue, 03/02/15 Final exam Final Exam    

Field Trips

Within the CAMP lecture, we try to bring students into contact with industrial leaders providing computer-aided medical systems and software. We plan to arrange the following trips for this lecture. Please note that other lectures overlapping with the field trip days will not be canceled or repeated.

A detailed plan for the trips will be announced shortly.

Registration

  • Field trips are free of charge, but the number of places is limited in each case
  • Places for the trip are granted to BMC students with the first priority. The rest places will be granted on a first come first served basis.
  • Students are required to register for the trips to attend

Registration for the visits and field trips will be done personally with Dr. Tingying Peng or Shadi Nabil Albarqouni in Room 03.13.056. To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips.

BrainLab AG

Date: Tuesday, 21/10/14.

Registration for the visits and field trips will be done personally with Dr. Tingying Peng or Shadi Nabil Albarqouni in Room 03.13.056. To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips.

There will be a half-day field trip to BrainLAB AG. BrainLAB provides advanced radiotherapy, radiosurgery, neurosurgery, orthopedic and ENT surgery products, services, and software solutions worldwide.

Agenda

time Event Guide
13:00 Introduction to Brainlab and the Recruitment Process Verónica Garíca Caro (Recruiter)
13:30 Presentation 1 Jens Witte (Director R&D Medical Data Enrichment)
14:30 Coffee Break  
15:00 Presentation 2 Jasmine Schirmer
16:00 Company Tour Petra Rinke (Customer Visit/Event Manager)
16:45 Photo Shooting Sebastian Lumer

We will meet directly at BrainLAB at 12:45pm sharp. We cannot provide a bus for this field trip, so you have to get there by yourselves (you can share cars or go by public transport). The address is BrainLAB AG, Kapellenstr. 12, 85622 Feldkirchen.

A short extract about using public transport to arrive at Brainlab from the BrainLAB website: "From Munich City take the S2 towards 'Erding/Markt Schwaben'. Exit at the 'Feldkirchen' stop. From here you can take a taxi or the regional bus 263, in the direction 'Messestadt West.' Brainlab is located a few meters walking distance from the 'Kapellenstraße' bus stop."

Siemens AG Healthcare

Date: Tuesday, 13/01/15.

Registration for the visits and field trips will be done personally with Dr. Tingying Peng or Shadi Nabil Albarqouni in Room 03.13.056. To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips. The registration will be open ONLY in the following time slots: Friday (28/11/14), Monday (01/12/14) and Tuesday (02/12/14) 10:00 - 12:00, 14:00 - 16:00. BMC students will be guaranteed to be able to join the visit if registered within the open period. For students not majored in BMC, you will also have to pay the 20 EUR deposit. However we will need to wait till the end of the registration period to count the number of registered BMC students to decide how many students in other majors can join the visit (on a first-come-first-serve basis). Afterwards your deposit will be returned if you are outside the limited number of allowed students.

There will be a whole-day field trip to Siemens AG Healthcare in Erlangen. A bus will be provided, bringing students from TUM Garching to the Siemens site and back. The two Siemens sites in Erlangen and Forchheim serve as research and production sites for CT (Computed Tomography), AX (Angiography / X-Ray), MR (Magnetic Resonance Imaging), and SP (Special Products).

Agenda

Meeting location: Garching Forschungszentrum bus stop Map
Meeting time:6:20AM

This is not a typo! The bus will arrive at 6:20AM and will leave at 6:40AM to get to Erlangen by 9AM. The bus will leave on time for the rest of the schedule to work out.

List of confirmed participants:

Name
Josef Brandl
Linda Bui
Edengenet Dejene
Kristina Erhard
Francisco Esteban Vicente
Fabio Gratl
Thomas Hartmann
Tobias Hoh
Elizabeth Huaroc Moquillaza
Ashkan Khakzar
Anna Kolpakova
Sandra Kraft
Vitaly Nikolaev
Suhanyaa Nitkunanantharajah
Maria Paula Orihuela Martínez Costa
Sophie Elizabeth Ratcliffe
Yadira Saint-Hill Febles
Mahdi Saleh
Jairo Socarras Fernandez
Hannah Wester
Alexander Winkler
Ruchik Yajnik
Sergey Zakharov

Agenda

Details to be announced soon.

Trip to ZEISS

Date: Thursday 22/01/15
Registration for the Zeiss trip will be open on 14th and 16th Jan. It will be done personally with Shadi Nabil Albarqouni in Room 03.13.056 on 14th and 16th of Jan all day as long as the office is still open. To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips. BMC students will be guaranteed to be able to join the visit if registered within the open period. For students not majored in BMC, you will also have to pay the 20 EUR deposit. However we will need to wait till the end of the registration period and count the number of registered BMC students to decide how many students in other majors can join the visit (on a first-come-first-serve basis). Afterwards your deposit will be returned if you are outside the limited number of allowed students.

We will meet directly at Zeiss at 12:40pm sharp . We cannot provide a bus for this field trip, so you have to get there by yourselves. The address is KistlerhofStrasse 75 81379 Munich. (Close to Aidenbachstrasse on the U3 line).

Map to Zeiss

Agenda:

Time Activity
13:00-13:30 Welcome talk
13:30-15:30 Lab visit: NAC, Cataract, Microscopy
15:30-16:00 Forum retina workplace

Final Exam

Time and location:

  • The final exam will take place on Tue, 03/02/15 11:30-13:30 at Interims Hörsaal 2 (5620.01.102)

Details:

  • Type: written, closed book (i.e. no material allowed), approx. 90 minutes
  • The final exam covers all the materials from the course (except those from the lecture 'MULTI-MODAL BRAIN IMAGE ANALYSIS' which did not happen)
  • Grading of the exam:
    • Approx. 80% for questions and problems to solve on the CAMP lectures.
    • Approx. 20% for questions on invited talks.
    • No questions about the field trips.
  • The exam results will be published at TUM-Online.

Sample questions for the exam: Sample questions

Literature

Primary Literature

Secondary Literature


TeachingForm
Title: Computer Aided Medical Procedures
Professor: Prof. Dr. Nassir Navab
Tutors: Dr. Wolfgang Wein, Dr. Lichao Wang, Dr. Tingying Peng
Type: Lecture
Information: 4 + 0 SWS, 6 ECTS Credits (Module IN 2021)
Term: 2014WiSe
Abstract: Computer science is playing an increasingly important role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors. This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes. There will be invited guests from the hospital Rechts der Isar and also medical companies in the Thursday classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.


Edit | Attach | Refresh | Diffs | More | Revision r1.40 - 06 May 2015 - 11:30 - LichaoWang

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