TeachingWs13CAMPLecture

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Computer Aided Medical Procedures (CAMP) - IN2021

  Lecture by Prof. Dr. Nassir Navab & invited speakers.

Module IN2021: 4+0 SWS, 6 ECTS, Praktische Informatik, Wahlfach

Time & Location:

  • The classes and exam are in English.

Announcements:

Abstract

Computer science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors.

This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes.

There will be invited guests from the hospital Rechts der Isar and also medical companies in the classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.

Here is a rough overview of the topics that were presented in last year's lecture:

  • Introduction
  • Computer-Aided Surgery and Exemplary Applications
  • Image Processing and Segmentation
  • Registration
  • Basics of Tracking Technologies
  • Visualization and Medical Augmented Reality
  • Surgical Workflow - Analysis, Monitoring and Applications
  • Basics of Radiography (X-Ray, CT etc.) - Physical Properties, Applications, Radiation Therapy
  • Magnetic Resonance Imaging - Basics, Advanced MRI and Applications
  • Ultrasound Imaging
  • Nuclear Medicine (PET/SPECT)

For a more detailed overview, see last year's lecture.

Prerequisites:

  • Interest in medical image processing

Benefits:

  • Knowledge in medical image acquisition / image modalities
  • Deep insight into medical image computing

This lecture is going to be succeeded by "Computer Aided Medical Procedures 2" (see summer term 2012 CAMP 2 lecture page) (2+2 SWS, 6 ECTS) in the next summer term (which is recommended, but not obligatory).

Course Schedule

A password is needed to access the lecture slides and materials. This will be announced in the first lecture.

Week Type Topic Lecturer Material
Tue, 15/10/13 CAMP INTRODUCTION Prof. Dr. Navab Introduction
Thu, 17/10/13 CAMP BRIEF HISTORY RADIOLOGY Prof. Dr. Navab Brief History Radiology
Tue, 22/10/13 CAMP INTRODUCTION TO IMAGE PROCESSING Dr. Katouzian Introduction to Image Processing
Thu, 24/10/13 CAMP SEGMENTATION 1 Dr. Baust  Segmentation part I
 basic_segmentation.zip
Tue, 29/10/13 CAMP CT RECONSTRUCTION 1 Dr. Wein CT Reconstruction 1
Thu, 31/10/13 CAMP CT RECONSTRUCTION 2 Dr. Wein CT Reconstruction 2
Tue, 05/11/13 CAMP MEDICAL ULTRASOUND 1 Dr. Wein  
Thu, 07/11/13 CAMP MEDICAL ULTRASOUND 2 Dr. Wein Medical Ultrasound 1+2
Tue, 12/11/13 CAMP INTENSITY BASED REGISTRATION Prof. Dr. Navab Intensity Based Registration
Thu, 14/11/13 CAMP FEATURE BASED REGISTRATION Prof. Dr. Navab
Feature Based Registration
Tue, 19/11/13 CAMP SEGMENTATION 2 Dr. Baust  Segmentation part II (corrected version)
 advanced_segmentation.zip
Thu, 21/11/13 TRIP BrainLAB AG, NARVIS lab -  
Tue, 26/11/13 CAMP DEFORMABLE REGISTRATION Prof. Dr. Navab Deformable Registration (Updated)
Thu, 28/11/13 mid-term exam 6:30pm-8:30pm Midterm Exam. Location: 101 Interims Hörsaal 1    
Tue, 03/12/13 CAMP 3D FREEHAND & INTERVENTIONAL ULTRASOUND Dr. Wein 3D Freehand & Interventional US
Thu, 05/12/13 CAMP COMPUTER-AIDED SURGERY AND NAVIGATION Prof. Dr. Navab Computer Assisted Surgery and Navigation
Tue, 10/12/13 INVITED 2D/3D REGISTRATION & VALIDATION Prof. Dr. Pernus 2D/3D Registration methods

Validation of 3D/2D
registration methods
Thu, 12/12/13 no lecture (public holiday) - -  
Tue, 17/12/13 INVITED UNIVERSITY START-UP EXPERIENCE IN INTRAOP IMAGING & NAVIGATION Dr. Joerg Traub Medical Imaging Entrepreneurship
Thu, 19/12/13 INVITED PHYSICS OF RADIATION Prof. Dr. Wilkens Physics of Radiation
24/12/13 - 06/01/14   no lectures (christmas) - -
Tue, 07/01/14 CAMP MEDICAL AUGMENTED REALITY STATE OF THE ART Prof. Dr. Navab Medical AR State of the Art
Thu, 09/01/14 INVITED MRI-BASICS AND APPLICATIONS Dr. Nekolla MRI Basics and Applications
Tue, 14/01/14 INVITED MRI- ADVANCED Dr. Nekolla Advanced MRI
Thu, 16/01/14 INVITED MULTI-MODAL BRAIN IMAGE ANALYSIS Dr. Menze MULTI-MODAL BRAIN IMAGE ANALYSIS
Tue, 21/01/14 TRIP BrainLAB AG, ZEISS - -
Thu, 23/01/14 INVITED MOTION ANALYSIS OF EPILEPSY Dr. Vollmar Motion Analysis of Epilepsy
Tue, 28/01/14 TRIP SIEMENS AG HEALTHCARE, ZEISS -  
Thu, 30/01/14 INVITED INTRODUCTION TO NUCLEAR MEDICINE Dr. Shi Introduction to Nuclear Medicine
Tue, 04/02/14 INVITED COMPUTATIONAL METHODS IN MOLECULAR IMAGING Dr. Shi Computational Methods in Molecular Imaging
Fri, 07/02/14 Final exam 4:30pm-6:30pm FINAL EXAM. Location: MI Hörsaal 1    

Field Trips

Within the CAMP lecture, we try to bring students into contact with industrial leaders providing computer-aided medical systems and software. We plan to arrange the following trips for this lecture. Please note that other lectures overlapping with the field trip days will not be canceled or repeated.

Registration

  • Field trips are free of charge, but the number of places is limited in each case
  • Places for the trip are granted on a first came first served basis
  • Students are required to register for the trips to attend

Registration for the visits and field trips will be done personally at the office of Peter Maday (03.13.035). To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips.

BrainLab AG

Date: Thursday 21/11/13, from 1PM Registrations are closed now!

There will be a half-day field trip to BrainLAB AG. BrainLAB provides advanced radiotherapy, radiosurgery, neurosurgery, orthopedic and ENT surgery products, services, and software solutions worldwide.

Agenda

time Event Guide
13:00 Product Presentation Neuro + Apps Jens Witte (Director R&D Medical Data Enrichment)
14:00 Product Presentation RT Carsten Raupach (Senior Project Manager)
15:00 Coffee break
15:30 Company Tour Petra Rinke (Customer Visit/Event Manager)
16:00 End of Tour

We will meet directly at BrainLAB at 12:45pm sharp . We cannot provide a bus for this field trip, so you have to get there by yourselves (you can share cars or go by public transport). The address is BrainLAB AG, Kapellenstr. 12, 85622 Feldkirchen.

A short extract about using public transport to arrive at Brainlab from the BrainLAB website: "From Munich City take the S2 towards 'Erding/Markt Schwaben'. Exit at the 'Feldkirchen' stop. From here you can take a taxi or the regional bus 263, in the direction 'Messestadt West.' Brainlab is located a few meters walking distance from the 'Kapellenstraße' bus stop."

List of confirmed participants (max 25):

Name
1 Salvatore Virga
2 Precup Cristina
3 Miguel Angel Herrero Ramiro
4 Iro Laina
5 Ahmed El-Faiky
6 Sing Chun
7 Michael Betten
8 Christoph Graumann
9 Felix Bork
10 Shweta Shitole
11 Poulami Chakrabarti
12 Anca Stefanoiu
13 Vsiswanath Pamulakanty
14 Merrit Hallman
15 Linda Marchioro
16 Imran Mashood Badshah
17 Ana A. Lopez
18 Catalina Guzman
19 Pedro A. Gomez
20 Sindhushree J.
21 Yeshaswini N.
22 Patmaa S.
23 Deepadahshini G.
24 Barbara Hilsenbeck
25 MD Mustafizur Rahman
26 Bernhard Fernando
27 Neda Davondi
28 Zhengyu Shan
29 Sasa Cheng
30 Mohammad Hasan Sarhan

-->

Trip to ZEISS (max 30)

Date: Tuesday 21/01/14
Registrations are open now!

The presentations will be held in English!

We will meet directly at Zeiss at 12:40pm sharp . We cannot provide a bus for this field trip, so you have to get there by yourselves. The address is KistlerhofStrasse 75 81379 Munich. (Close to Aidenbachstrasse on the U5 line).

Map to Zeiss

Agenda:

Time Activity
13:00-13:30 Begrüßungsrede und vorstellen die CZM AG
13:30-14:10 NAC
14:10-14:50 Mikroskope
14:50-15:30 Callisto eye
15:30-15:45 Break
15:45-16:15 Advanced Mikroskopie und die Forschungen in Oberkochen
16:15-16:45 FORUM and Glaucoma workplace

List of confirmed participants:

Name
1 Salvatore Virga
2 Christina Precup
3 Mahyar Valizadeh
4 Christoph Graumann
5 Felix Bork
6 Iro Laind
7 Ahmed El-Fiky
8 Imran Badshah
9 Shwetu Shitle
10 Poulani Chakrabasti
11 Sasa Cheng
12 Yeshaswini Nagaraj
13 Sindhushree J.
14 Patmaa S.
15 Deepa Darshing
16 Viswanath P. S.
17 Sin Chu
18 Fatemeh Nejat
19 Beatrice Lentes
20 Andre So Enger
21 Neda Davondi
22 Daniele Volpi
23 Catalina Raymondt
24 Ana Lopez
25 Zhengyu Shan

-->

Second trip to BrainLab AG (max 25)

Date: Tuesday 21/01/14
Registrations are open now!

There will be a half-day field trip to BrainLAB AG. BrainLAB provides advanced radiotherapy, radiosurgery, neurosurgery, orthopedic and ENT surgery products, services, and software solutions worldwide.

We will meet directly at BrainLAB AG at 12:45pm sharp. We cannot provide a bus for this field trip, so you have to get there by yourselves (you can share cars or go by public transport). The address is BrainLAB AG, Kapellenstr. 12, 85622 Feldkirchen.

Agenda

To be announced!
time Event Guide

List of confirmed participants:

Name
1 Stefan Matl
2 Gerhard Hagerer
3 Fei Yu
4 Tolumalope Gbakinro
5 Ravi Sharma
6 Christine Kroll
7 Jakob Weiss
8 Satish Balakrishnan
9 Armin Schöntag
10 Felix Bourassa Moreau
11 Kristans Diaz Rojas

-->

Second trip to ZEISS (max 30)

Date: Tuesday 28/01/14

List of confirmed participants:

Name
1 Felix Bourassa-Moreau
2 Nadezda Volkova
3 Mhd Hasan Sahran
4 Miguel Angel Herrero Ramiro
5 Daniel Bäck
6 Bruno Bierbaumer
7 Kristans Diaz Rojas
8 Sailesh Conjeti
9 Lichao Wang
10 Loic Peter

-->

Siemens AG Healthcare

Date: Tuesday 28/01/14
Registrations are open now!

There will be a half-day field trip to Siemens AG Healthcare in Erlangen. A bus will be provided, bringing students from TUM Garching to the Siemens site and back. The two Siemens sites in Erlangen and Forchheim serve as research and production sites for CT (Computed Tomography), AX (Angiography / X-Ray), MR (Magnetic Resonance Imaging), and SP (Special Products).

Agenda

Details to be announced soon. Meeting location: Garching Forschungszentrum bus stop Map
Meeting time: 6:30AM

This is not a typo! The bus will arrive at 6:30AM and will leave at 6:50AM to get to Erlangen by 9AM. The bus will leave on time for the rest of the schedule to work out.

List of confirmed participants:

Name
1 Eva Helmerich
2 Maximilian Roedenstein
3 Salvatore Virga
4 Fatemeh Nejat
5 Christina Precup
6 Mahyar Valizadeh
7 Iro Laina
8 Stefan Matl
9 Ahmed El-Fiky
10 Imran Badshah
11 Gerhard Hagerer
12 Schwetu Shitole
13 Sasa Cheng
14 Sing Chun
15 Jakob Weiss
16 Toluwalop F. Gbalkinro
17 Poulani Chakrabarti
18 Beatrice Lentes
19 Christine Kroll
20 Neda Davondi
21 Denis Declara
22 Daniele Volpi
23 Catalina Raymond
24 Felix Bork
25 Merrit Hallman
-->

Exam

Time & Location:

The final exam will take place on Fri, 07/02/14 between 4:30pm-6:30pm Location: MI Hörsaal 1

Details:

Type: written, closed book (i.e. no material allowed), approx. 90 minutes The final exam covers all the materials from the course Grading of the exam: Approx. 80% for questions and problems to solve on the CAMP lectures. Approx. 20% for questions on invited talks. No questions about the field trips. The exam results will be published at TUM-Online.

Sample questions for the exam: Sample questions

Registration:

Please register via TUM-Online under German title "Informatikanwendungen in der Medizin" (IN2021) In case you can not (for any reason) register via TUM-Online, register personally at the Infopoint for Informatics Students (MI 00.10.013). -->

Exam

There will be one exam.

Time & Location:

  • The final exam will take place on Fri, 07/02/14 4:30pm-6:30pm Location: MI Hörsaal 1

Details:

  • Type: written, closed book (i.e. no material allowed), approx. 90 minutes
  • The final exam covers all the materials from the course
  • Grading of the exam:
    • Approx. 80% for questions and problems to solve on the CAMP lectures.
    • Approx. 20% for questions on invited talks.
    • No questions about the field trips.
  • The exam results will be published at TUM-Online.

Sample questions for the exam: Sample questions

Registration:

  • Please register via TUM-Online under German title "Informatikanwendungen in der Medizin" (IN2021)
  • In case you can not (for any reason) register via TUM-Online, register personally at the Infopoint for Informatics Students (MI 00.10.013).

Literature

Primary Literature

Secondary Literature


TeachingForm
Title: Computer Aided Medical Procedures
Professor: Prof. Dr. Nassir Navab
Tutors: Dr. Amin Katouzian, Dr. Wolfgang Wein, Dr. Maximilian Baust
Type: Lecture
Information: 4 + 0 SWS, 6 ECTS Credits (Module IN 2021)
Term: 2013WiSe
Abstract: Computer science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors. This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes. There will be invited guests from the hospital Rechts der Isar and also medical companies in the Thursday classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.


Edit | Attach | Refresh | Diffs | More | Revision r1.126 - 25 Dec 2014 - 06:29 - LichaoWang

Lehrstuhl für Computer Aided Medical Procedures & Augmented Reality    rss.gif