TeachingWs15MSD

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Lab Course / Praktikum: Project Management and Software Development for Medical Applications

by Prof. Nassir Navab and Dr. Benjamin Frisch
Tutors: Felix Achilles, Shadi Albarqouni, Leslie Casas and Kristians Diaz

Type: Master Practical Course Module IN2106, Module IN8902, Module IN4136
SWS: 6
Programs: Biomedical Computing (Master), Informatics (Master), Informatics (Diploma)
ECTS: 10 Credits

Preliminary Meeting ("Vorbesprechung"): 10.07.2015 Friday 10:00-11:00, MI 03.13.010
Weekly Meetings: See schedule below, Wednesdays 15:30-17:00, MI 03.13.010

This course in TUMOnline: Link
The course will be conducted in English.

News

Please check back here regularly, as important news will be posted here.

  • January 28, 2016: Room change: Final Presentations II will take place at 15:45 in the seminar room of building 11, in MI 03.11.018.
  • November 9, 2015: Reminder: The "Documentation, Tests, Design Patterns & Integration Strategy" lecture will be held on Thursday (12th of November) this week.
  • November 4, 2015: The CAMP-template for Power Point presentations can be downloaded here
  • October 28, 2015: Today's UML lecture is shifted to Thursday, 05.11., 3:30pm-5:00pm. UML lecture slides are online.
  • October 21, 2015: Projects are assigned! Please get in contact with your supervisor and arrange a first meeting. Today: First Lecture! (Software Project Management)
  • July 10, 2015: Please register for the course at https://matching.in.tum.de/
  • July 7, 2015: Initial meeting is scheduled for July 10, 2015 Friday at 10:00.
  • July 7, 2015: Course website created.

Registration

Please give rank in the matching system for the course registration between 10 July - 21 July (link). TUMOnline and first come first serve is not valid for practical and seminar courses anymore. For further details about how matching system works and its schedule please check this website.

General content

The Lab Course is intended to teach the basic concepts of software project management and development for medical applications. You will be confronted with a brief introduction to software project management concepts such as requirement analysis, software design, coding guidelines and unified modeling language (UML). In addition, topics like software version control, deployment engineering and testing will be explored. You will be assigned a medical software project to apply the mentioned concepts in a real-life scenario.

Prerequisites

This course requires basic knowledge of C++. The concepts of OO Programming and other concepts as conducted in the Introduction to CS lecture are assumed.

Schedule

Date Topic Conducted by Materials
July 10th, 2015 Preliminary meeting ("Vorbesprechung") Course Tutors Slides
Oct 14th, 2015 Organizational Issues, Project Announcements Course Tutors, Project Supervisors Slides
Oct 21st, 2015 Lecture: Software Project Management Course Tutors Slides
Nov 4th, 2015 Project Requirements Presentations Course Tutors, Seminar Participants Guidelines
Nov 5th, 2015 (Thu!) Lecture: Unified Modeling Language (UML) Course Tutors Slides
Nov 12th, 2015 (Thu!) Lecture: Documentation, Tests, Design Patterns & Integration Strategy Course Tutors Slides
Four weeks of no session.      
Dec 16th, 2015 Intermediate Presentations Part I Course Tutors, Seminar Participants Guidelines
Dec 17th, 2015 Intermediate Presentations Part II Course Tutors, Seminar Participants  
Four weeks of no session.      
Jan 20th, 2016 Q&A Final Presentations Course Tutors  
Jan 27th, 2016 15:30-18:00 Final Presentations Part I Course Tutors, Seminar Participants Guidelines
Jan 28th, 2016 15:45-18:00 Final Presentations Part II in MI 03.11.018. Course Tutors, Seminar Participants  

Final Presentations Schedule

Wednesday, January 27th 2016, 15:30-18:00, CAMP Seminar room. 10 minutes slot for each presenter (plus 2 minutes for questions). [Projects of 2 people will of course get 20 minutes in total plus 4 minutes for questions.]

Slot Name Project ID
1st Alexander 1
2nd Yadira 16
3rd+4th Edengenet+Paula 15
5th Thomas 2
6th+7th Noor+Anna 8

Thursday, January 28th 2016, 15:30-18:00, CAMP Seminar room. 10 minutes slot for each presenter (plus 2 minutes for questions). [Projects of 2 people will of course get 20 minutes in total plus 4 minutes for questions.]

Slot Name Project ID
1st+2nd Benedikt+Sara 12
3rd Mai 10
4th Javier 14
5th Stefan 7
6th Sergey 11
7th Andrzej 4

Intermediate Presentations Schedule

Wednesday, 16.12.2015, 15:30-17:00, CAMP Seminar room. 7 minutes slot for each presenter (plus 2 minutes for questions).

Slot Name Project ID
1st+2nd Noor+Anna 8
3rd+4th Edengenet+Paula 15
5th Francisco 14
6th Ruchik 13
7th+8th Benedikt+Sara 12
9th Sergey 11

Thursday, 17.12.2015, 15:30-17:00, CAMP Seminar room. 7 minutes slot for each presenter (plus 2 minutes for questions).

Slot Name Project ID
1st Mai 10
2nd Yadira 16
3rd Stefan 7
4th Andrzej 4
5th Thomas 2
6th Alexander 1

Available Projects

ID Student Project Title Supervisor Additional Material
1 Alexander Electronic Record Form in Ophthalmology for Documentation of Intravitreal Injections Chris Lohmann PDF Project Proposal
2 Thomas Needle tracking for ultrasound-guided biopsies with inside-out vision Benjamin Busam PDF Project Proposal
3 - Reducing the orthopaedic risk of cycling with a vision-based anthropometric scanner Benjamin Busam PDF Project Proposal
4 Andrzej Mobile telephony management in Surgery room Ahmed Elsherbini PDF Project Proposal
5 - Simulation and reconstruction of the Siemens Biograph mMR using GATE and STIR Jorge Cabello PDF Project Proposal
6 Vitaly Simulation of PET detectors based on continuous crystals using GATE Jorge Cabello PDF Project Proposal
7 Stefan Visualizing the volumetric accuracy of medical tracking solutions Benjamin Busam PDF Project Proposal
8 Noor, Anna Deep Learning for Biomedicine Vladimir Golkov PDF Project Proposal
9 - 3D Interventional Stent Reconstruction Stefanie Demirci PDF Project Proposal
10 Mai EP-Catheter Enhancement in Lowest Dose Image Series Stefanie Demirci PDF Project Proposal
11 Sergey Tracking using Autoencoders and Manifolds Federico Tombari PDF Project Proposal
12 Sara, Benedikt Parallax-free Xray stitching using depth based pose estimation Séverine Habert PDF Project Proposal
13 Ruchik Image-quality dependent ultrasound gel application Benjamin Frisch PDF Project Proposal
14 Francisco Bringing the robotic SPECT-CT prototype into the Operating Room Marco Esposito PDF Project Proposal
15 Paula, Edengenet Automatic triage of patients using anatomical MR images Gabriel Castrillón PDF Project Proposal
16 Yadira Computer assisted optical biopsy for colorectal polyps Diana Mateus PDF Project Proposal

Passing requirements

  • Active participation in the lecture meetings
  • Submission of all assignments in time
  • Present your final assignment work

Literature/Resources

C++

Documenting your code

  • Doxygen, a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.

MS Visual Studio (2010)

  • Can be downloaded on the TUM Maniac Server
  • Short tutorial on how to create a Win32 Console Project, and to run it
  • Tutorial with some debugging tips and tricks in MS Visual Studio (this tutorial features some C# code, but the tips and tricks shown should work similarly on C++ code).

Github

  • Github, a freeware Github client for Mac/Windows
  • A nice Github tutorial for beginners
  • You can ask your Tutors how to create an account on our CAMPgit.

OpenGL

Qt

OpenCV

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TeachingForm
Title: Project Management and Software Development for Medical Applications
Professor: Prof. Nassir Navab
Tutors: Benjamin Frisch,Felix Achilles, Shadi Albarqouni, Leslie Casas and Kristians Diaz
Type: Praktikum
Information: 10 ECTS credits
Term: 2015WiSe
Abstract:  


Edit | Attach | Refresh | Diffs | More | Revision r1.31 - 28 Jan 2016 - 12:48 - FelixAchilles

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