TeachingWs17ImageBasedBiomedicalModeling

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Hauptseminar/Master Seminar:
Image-based Biomedical Modeling

Bjoern Menze (TUM), Marie Piraud (TUM), and external lecturers.

Type: Master Seminar Module IN2107
SWS: 2+0
ECTS: 5 Credits
Location: IMETUM Seminar Room
Time: Wednesday 1300-1500
Course Language: English

Announcements

  • [10.07.2017] If you were unable to attend the intro meeting, have a look at the Slides. You can still register via the central seminar assignment system.
  • [03.07.2017] Info on the seminar will be given on Wednesday 12.07.2017, 1400h, at the IMETUM/GSB in room 1.211.

Content

Many clinical imaging sequences include image modalities that provide unique insights into the human body: describing blood flow pattern or water diffusion, visualizing micro-structural tissue properties, or quantifying metabolic processes that have been found to be relevant for specific diseases. To access and explore the rich biological information of such multimodal CT, PET, and MR image data sets, different approaches from biophysical modeling and computational physiology are used.

The topic of this seminar is to survey such computational models by reading, discussing and understanding key publications in this field, for example, on:

  • spatial atlases that encode the variation of anatomy throughout the population in a probabilistic fashion,
  • dynamical models that describe blood flow patterns in MR and CT, or the the dynamics of metabolic pathways as measured via PET,
  • spatio-temporal models that describe cardiac electro-physiological excitations, or the growth patterns of tumors,
  • global probabilistic models that relate image features with clinical information or genetic variables.

Emphasis is put on improving presentation style. All presenters will present their talk twice during the course of the semester, and after the first time the group discussion will focus on presentation style.

Regulations

In this Master Seminar (formerly Hauptseminar), each student is asked to select one paper from a list. In order to successfully complete the seminar, participants have to fulfill these requirements:

  • Presentation: The selected paper is presented to the other participants (20 minutes presentation 10 minutes questions). Use the CAMP templates for PowerPoint CAMPmaster.pot, or Latex: CAMP-latex-template.zip. All papers will be presented at two occasions. After the first presentation we will discuss presentation and presentation style, after the second presentation we will discuss the research topic of the paper.
  • Written Handout: A document of 4-8 pages is written and handed in two days before the presentation (i.e., on the Monday morning before the final presentation). Please download and use the llncs2e.zip Latex template. It can be edited and updated following comments in the final presentation.
  • Attendance: Participants have to participate actively in all seminar sessions.

Each presentation is followed by a discussion and everyone is encouraged to actively participate. The handout must include all references used and should be your own review of the paper (don't copy & paste). Both handout and presentation will have to be in English. It can follow the structure of the presentation: Intro (incl. statement of the problem, prior work, contribution of the present work), Methods (previously existing and improvements), Experiments (data and results), Conclusion / Summary.

Schedule

The seminar consists of an introductory meeting and seminar sessions. Each of the sessions will consist of several student presentations. All seminar participants are expected to be present at every session and to actively participate in the discussion.

List of Papers

Papers will be announced in September. Topics will be similar to those discussed in the seminars of the previous years SS 14, WS 15, and WS 16.

Papers will be from conferences, such as MICCAI, IPMI, or CVPR of the past three years.

Literature and Helpful Links

A lot of scientific publications can be found online.

The following list may help you to find some further information on your particular topic:

Some publishers:

Libraries (online and offline):

Some further hints for working with references:

  • JabRef is a Java program for comfortable working with Bibtex literature databases. Handy feature: if you know the PubMed ID for an article, JabRef can import data from there (via "Web Search/Medline").
  • Mendeley is a cross-platform program for organising your references.

If you find useful resources that are not already listed here, please tell us, so we can add them for others. Thanks.


TeachingForm
Title: Image based biomedical modeling seminar
Professor: Bjoern Menze
Tutors: Marie Piraud
Type: Hauptseminar
Information: Hauptseminar, SWS: 2, ECTS: 5
Term: 2017WiSe
Abstract:  


Edit | Attach | Refresh | Diffs | More | Revision r1.4 - 20 Jul 2017 - 09:02 - BjoernMenze

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