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Lecture by Prof. Dr. Nassir Navab & invited speakers.
Module IN2021: 4+0 SWS, 6 ECTS, Praktische Informatik, Wahlfach
Time & Location:
Announcements:
- Grades with the repeat exam are out.
- Final Grades are out. Note that 'X' means the student didn't attend the final exam. Please have a look and decide whether you want to register for the repeat exam. The repeat exam will be on 14th Apr. 2015, at 17:30 - 19:00 MW 1801, Ernst-Schmidt-Hörsaal (5508.01.801).
- Midterm results is out. Please note that the max. number of points is 33.
- Time and Location of the final exam: Time: 3rd Feb. 2015, 11:30 - 13:30; Location: Interims Hörsaal 2 (5620.01.102). The exam includes questions that require to write down the detailed answers and multiple choice questions.
- Registration for the Zeiss trip will be open on 14th and 16th Jan. Please check below for details.
Abstract
Computer science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors.
This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes.
There will be invited guests from the hospital Rechts der Isar and also medical companies in the classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.
Here is a rough overview of the topics that were presented in last year's lecture:
- Introduction
- Computer-Aided Surgery and Exemplary Applications
- Image Processing and Segmentation
- Registration
- Basics of Tracking Technologies
- Visualization and Medical Augmented Reality
- Surgical Workflow - Analysis, Monitoring and Applications
- Basics of Radiography (X-Ray, CT etc.) - Physical Properties, Applications, Radiation Therapy
- Magnetic Resonance Imaging - Basics, Advanced MRI and Applications
- Ultrasound Imaging
- Nuclear Medicine (PET/SPECT)
For a more detailed overview, see last year's lecture.
Prerequisites:
- Interest in medical image processing
Benefits:
- Knowledge in medical image acquisition / image modalities
- Deep insight into medical image computing
This lecture is going to be succeeded by "Computer Aided Medical Procedures 2" (see summer term 2014 CAMP 2 lecture page) (2+2 SWS, 6 ECTS) in the next summer term (which is recommended, but not obligatory).
Course Schedule
A password is needed to access the lecture slides and materials. This will be announced in the first lecture.
Field Trips
Within the CAMP lecture, we try to bring students into contact with industrial leaders providing computer-aided medical systems and software. We plan to arrange the following trips for this lecture. Please note that other lectures overlapping with the field trip days will not be canceled or repeated.
A detailed plan for the trips will be announced shortly.
Registration
- Field trips are free of charge, but the number of places is limited in each case
- Places for the trip are granted to BMC students with the first priority. The rest places will be granted on a first come first served basis.
- Students are required to register for the trips to attend
Registration for the visits and field trips will be done personally with Dr. Tingying Peng or Shadi Nabil Albarqouni in Room 03.13.056. To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips.
BrainLab AG
Date: Tuesday, 21/10/14.
Registration for the visits and field trips will be done personally with Dr. Tingying Peng or Shadi Nabil Albarqouni in Room 03.13.056. To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips.
There will be a half-day field trip to BrainLAB AG. BrainLAB provides advanced radiotherapy, radiosurgery, neurosurgery, orthopedic and ENT surgery products, services, and software solutions worldwide.
Agenda
| time | Event | Guide |
|---|
| 13:00 | Introduction to Brainlab and the Recruitment Process | Verónica Garíca Caro (Recruiter) |
| 13:30 | Presentation 1 | Jens Witte (Director R&D Medical Data Enrichment) |
| 14:30 | Coffee Break | |
| 15:00 | Presentation 2 | Jasmine Schirmer |
| 16:00 | Company Tour | Petra Rinke (Customer Visit/Event Manager) |
| 16:45 | Photo Shooting | Sebastian Lumer |
We will meet directly at BrainLAB at 12:45pm sharp. We cannot provide a bus for this field trip, so you have to get there by yourselves (you can share cars or go by public transport). The address is BrainLAB AG, Kapellenstr. 12, 85622 Feldkirchen.
A short extract about using public transport to arrive at Brainlab from the BrainLAB website:
"From Munich City take the S2 towards 'Erding/Markt Schwaben'. Exit at the 'Feldkirchen' stop. From here you can take a taxi or the regional bus 263, in the direction 'Messestadt West.' Brainlab is located a few meters walking distance from the 'Kapellenstraße' bus stop."
Siemens AG Healthcare
Date: Tuesday, 13/01/15.
Registration for the visits and field trips will be done personally with Dr. Tingying Peng or Shadi Nabil Albarqouni in Room 03.13.056. To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips. The registration will be open ONLY in the following time slots: Friday (28/11/14), Monday (01/12/14) and Tuesday (02/12/14) 10:00 - 12:00, 14:00 - 16:00. BMC students will be guaranteed to be able to join the visit if registered within the open period. For students not majored in BMC, you will also have to pay the 20 EUR deposit. However we will need to wait till the end of the registration period to count the number of registered BMC students to decide how many students in other majors can join the visit (on a first-come-first-serve basis). Afterwards your deposit will be returned if you are outside the limited number of allowed students.
There will be a whole-day field trip to Siemens AG Healthcare in Erlangen. A bus will be provided, bringing students from TUM Garching to the Siemens site and back. The two Siemens sites in Erlangen and Forchheim serve as research and production sites for CT (Computed Tomography), AX (Angiography / X-Ray), MR (Magnetic Resonance Imaging), and SP (Special Products).
Agenda
Meeting location: Garching Forschungszentrum bus stop Map
Meeting time:6:20AM
This is not a typo! The bus will arrive at 6:20AM and will leave at 6:40AM to get to Erlangen by 9AM. The bus will leave on time for the rest of the schedule to work out.
List of confirmed participants:
Agenda
Details to be announced soon.
Trip to ZEISS
Date: Thursday 22/01/15
Registration for the Zeiss trip will be open on 14th and 16th Jan. It will be done personally with Shadi Nabil Albarqouni in Room 03.13.056 on 14th and 16th of Jan all day as long as the office is still open. To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips. BMC students will be guaranteed to be able to join the visit if registered within the open period. For students not majored in BMC, you will also have to pay the 20 EUR deposit. However we will need to wait till the end of the registration period and count the number of registered BMC students to decide how many students in other majors can join the visit (on a first-come-first-serve basis). Afterwards your deposit will be returned if you are outside the limited number of allowed students.
We will meet directly at Zeiss at 12:40pm sharp . We cannot provide a bus for this field trip, so you have to get there by yourselves. The address is KistlerhofStrasse 75 81379 Munich. (Close to Aidenbachstrasse on the U3 line).
Map to Zeiss
Agenda:
| Time | Activity  |
|---|
| 15:30-16:00 | Forum retina workplace |
| 13:30-15:30 | Lab visit: NAC, Cataract, Microscopy |
| 13:00-13:30 | Welcome talk |
Final Exam
Time and location:
- The final exam will take place on Tue, 03/02/15 11:30-13:30 at Interims Hörsaal 2 (5620.01.102)
Details:
- Type: written, closed book (i.e. no material allowed), approx. 90 minutes
- The final exam covers all the materials from the course (except those from the lecture 'MULTI-MODAL BRAIN IMAGE ANALYSIS' which did not happen)
- Grading of the exam:
- Approx. 80% for questions and problems to solve on the CAMP lectures.
- Approx. 20% for questions on invited talks.
- No questions about the field trips.
- The exam results will be published at TUM-Online.
Sample questions for the exam:
Sample questions
Literature
Primary Literature
- Overview
- [Peters2008] Terry M. Peters, Kevin Cleary: Image-Guided Interventions: Technology and Applications. Springer, 1st edition 2008
- [Peters2000] Terry M. Peters: Image-guided surgery: From X-rays to Virtual Reality. Comput Methods Biomech Biomed Engin, 4(1):27-57, 2000
- Modalities
- Computed Tomography
- Magnetic Resonance Tomography
- Image Processing / (Filtering, Morpholgical Operations, and Basic Segmentation Methods):
- Segmentation:
- [Pham2000] Dzung L. Pham, Chenyang Xu, and Jerry L. Prince. Current methods in medical image segmentation. Annual Review of Biomedical Engineering, 2:315-337, 2000. doi:10.1146/annurev.bioeng.2.1.315
- [MortensenLiveWire1992] E. Mortensen, B. Morse, W. Barrett, and J. Udupa: Adaptive Boundary Detection Using "Live-Wire" Two-Dimensional Dynamic Programming. Computers in Cardiology 1992. pp. 635-638. doi:10.1109/CIC.1992.269378
- [FalcaoLiveWire1998] A. X. Falcão et al.: User-Steered Image Segmentation Paradigms: Live Wire and Live Lane. Graphical Models and Image Processing 1998. Vol. 60, No. 4, pp. 233-260. doi:10.1006/gmip.1998.0475
- [Kass1988] M. Kass, A. Witkin, and D. Terzopoulos. Snakes: Active contour models. International Journal of Computer Vision. Vol. 1, No. 4, pp. 321-331. 1988. doi:10.1007/BF00133570
- [SethianLevelSetFastMarching] J. A. Sethian: Level Set Methods and Fast Marching Methods. Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision, and Materials Science. Cambridge University Press
- Registration:
- [Maintz1998] Maintz, J.B.A. & Viergever, M.A. A survey of medical image registration Medical Image Analysis, 1998, 2, 1-36
- [Hajnal2001] J. V. Hajnal, D. L. G. Hill, and D. J. Hawkes: Medical Image Registration. CRC Press, Biomedical Engineering Series, 2001
- Computer Vision:
- Computer Aided Surgery:
- [Grimson1999] W. Eric L. Grimson, Ron Kikinis, Ferenc A. Jolesz, and Peter McL. Black: Image-Guided Surgery. Scientific American, 280(6) pp. 62-69, 1999
Secondary Literature
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