Jana Lipková

Image-Based Biomedical Modeling Group (IBBM) Technische Universität München Fakultät für Informatik IMETUM - Zentralinstitut für Medizintechnik Boltzmannstr. 11 D-85748 Garching Germany Dept. of Neuroradiology TUM University Hospital TranslaTUM? Einsteinstraße 25 81675 München Email: jana.lipkova@tum.de Phone: +49 89 289 10840 Room: IMETUM 1.101

Research Interests

	For more detail information see Project Page Brain diseases simulations (glioma, brain deformations, stroke) Patient specific and image based simulations Uncertainty Quantification and Propagation Computational engineering Stochastic modeling

Publications

• J. Lipkova et al., Personalized Radiotherapy Planning for Glioma Using Multimodal Bayesian Model Calibration, (2018), (pdf)
• J Lipková, G Arampatzis, P Chatelain, B Menze, P Koumoutsakos, *S-Leaping: An adaptive, accelerated stochastic simulation algorithm, bridging tau-leaping and R -leaping, (2018), (pdf)
• L. Xu, G. Tetteh, J. Lipkova et al., Automated Whole-Body Bone Lesion Detection for Multiple Myeloma on 68Ga-Pentixafor PET/CT Imaging Using Deep Learning Methods, Contrast Media & Molecular Imaging (2018)
• P.F. Christ, F. Ettlinger, F. Grün, M.E.A. Elshaera, J. Lipkova, et al., Automatic Liver and Tumor Segmentation of CT and MRI Volumes using Cascaded Fully Convolutional Neural Networks, arXiv:1702.05970 (2017) (pdf)
• Jana Lipkova, Konstantinos Zygalakis, Jonathan Chapman and Radek Erban, "Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions", SIAM Journal on Applied Mathematics, Volume 71, Number 3, pp. 714-730 (2011) (pdf)

Student Projects

• Design of skull stripping tool for clinical practice
• Segmentation of liver and stroke lesions in CT scans
• Glioma Modelling Using Spectroscopy and PET Images
• Patient Specific and Image Based Modelling of Glioma
• Tumor induced brain deformations and mechanics
• Multiscale model of Glioma Progression
• Postoperative glioma evolution
• Tumor induced brain deformation model using elastography data
• detail project pages are coming soon, in the case of interest feel free to contact me

Students

• Christina Frost (TUM): Bone lesions project
• Christine Eilers (TUM): Tumour induced hypoxia and necrosis
• Irene Mayoral (TUM): Glioma growth and mass effect
• Shahnawaz Khalid (ETHZ): Hierarchical Bayesian approach for modelling brain tumours