MehmetYigitsoy

Chair for Computer Aided Medical Procedures & Augmented Reality
Lehrstuhl für Informatikanwendungen in der Medizin & Augmented Reality

Dr. Mehmet Yigitsoy

Dr. Mehmet Yigitsoy
E-Mail:
LinkedIn:
Phone: +49 89 289 19417
Address: Technische Universität München
Fakultät für Informatik, I-16
Boltzmannstr. 3
85748 Garching b. München
Germany
Room: MI 03.13.009B

Current Projects

Analysis and Visualization of Colon Motility

Analysis and Visualization of Colon Motility

The objective of this project is to develop a computer aided diagnosis tool to detect colon motility disorders by using cine MRI. The necessary image processing consists of breathing motion compensation, colon segmentation and modelling the natural motion of the colon. New algorithms for measuring the isometry of colon extension should be developed. A prototype software has been already implemented and should be improved in terms of usability.
Knowledge Propagation Models for Image Registration

Knowledge Propagation Models for Image Registration

To register modalities with complex intensity relationships, we leverage machine learning algorithm to cast it into a mono modal registration problem. This is done by extracting tissue specific features for propagating anatomical/structural knowledge from one modalitiy to an other through an online learnt propagation model. The registration and propagation steps are iteratively performed and refined. For proof-of-concept, we employ it for registering (1) Immunofluorescence to Histology images and (2) Intravascular Ultrasound to Histology Images.

Open Student Projects

Running Student Projects

Finished Student Projects

Publications

2015
M. Yigitsoy, A. Katouzian, N. Navab
Structure Propagation for Deformable Image Stitching
International Symposium on Biomedical Imaging: From Nano to Macro, New York, USA, April 2015 (bib)
M. Yigitsoy, V. Belagiannis, A. Djurka, A. Katouzian, S. Ilic, F. Pernus, A. Eslami, N. Navab
Random Ferns for Multiple Target Tracking in Microscopic Retina Image Sequences
International Symposium on Biomedical Imaging: From Nano to Macro, New York, USA, April 2015 (bib)
M. Alsheakhali, M. Yigitsoy, A. Eslami, N. Navab
Real Time Medical Instrument Detection and Tracking in Microsurgery
Bildverarbeitung für die Medizin, March. 2015, Lübeck, Germany (bib)
M. Alsheakhali, M. Yigitsoy, A. Eslami, N. Navab
Surgical Tool Detection and Tracking in Retinal Microsurgery
SPIE, Feb. 2015, Orlando, Florida, USA. (bib)
S. Conjeti, M. Yigitsoy, D. Sheet, J. Chatterjee, N. Navab, A. Katouzian
Mutually Coherent Structural Representation for Image Registration through Joint Manifold Embedding and Alignment
Proceedings of International Symposium on Biomedical Imaging (ISBI), Brooklyn, NY, USA, April 2015 (bib)
S. Conjeti, M. Yigitsoy, T. Peng, D. Sheet, J. Chatterjee, C. Bayer, N. Navab, A. Katouzian
Deformable Registration of immunofluorescence and Histology using iterative Cross-modal Propagation
Proceedings of International Symposium on Biomedical Imaging (ISBI), Brooklyn, NY, USA, April 2015 (bib)
2014
M. Yigitsoy, J. Fotouhi, N. Navab
Hough Space Parametrization: Ensuring Global Consistency in Intensity-based Registration
International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI), Boston, USA, September 2014 (bib)
M. Müller, M. Yigitsoy, H. Heibel, N. Navab
Deformable Reconstruction of Histology Sections using Structural Probability Maps
International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI), Boston, USA, September 2014 (bib)
F. Milletari, M. Yigitsoy, N. Navab, A. Ahmadi
Left Ventricle Segmentation in Cardiac Ultrasound Using Hough-Forests With Implicit Shape and Appearance Priors
MICCAI Challenge on Endocardial Three-dimensional Ultrasound Segmentation (CETUS), Boston, MA, September 2014 (bib)
T. Peng, M. Yigitsoy, A. Eslami, C. Bayer, N. Navab
Deformable registration of multi-modal microscopic images using a pyramidal interactive registration- learning methodology
6th Workshop on Biomedical Image Registration, London, UK, July, 2014 (bib)
2013
M. Yigitsoy, N. Navab
Structure Propagation for Image Registration
IEEE Trans. Med. Imag., vol. 32, no. 9, pp. 1657-1670, September 2013 (bib)
2012
M. Yigitsoy, M. Reiser, S. Kirchhoff, N. Navab
Out-of-plane Motion Compensation in Cine-MRI
The 4th MICCAI Workshop on Computational and Clinical Applications in Abdominal Imaging (MICCAI-ABD 2012), Nice, France, Oct 1, 2012 (bib)
A. Eslami, A. Teimori, M. Yigitsoy, N. Navab
A new framework for morphological and morphometric study of fish species based on groupwise registration of otolith images
IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, spain, May 2012 (bib)
M. Yigitsoy, M. Reiser, N. Navab, S. Kirchhoff
Dynamic Graph Cuts for Colon Segmentation in Functional Cine-MRI
IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2012), Barcelona, Spain, May 2 - 5, 2012 (bib)
C. Wachinger, M. Yigitsoy, E. Rijkhorst, N. Navab
Manifold Learning for Image-Based Breathing Gating in Ultrasound and MRI
Medical Image Analysis, Volume 16, Issue 4, May 2012, Pages 806–818. (bib)
2011
A. Eslami, M. Yigitsoy, N. Navab
Manifold learning for shape guided segmentation of Cardiac boundaries: Application to 3D+t Cardiac MR
33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'11), Boston, MA, August 30 - September 3, 2011. (bib)
M. Yigitsoy, C. Wachinger, N. Navab
Temporal Groupwise Registration for Motion Modeling
Information Processing in Medical Imaging (IPMI), July 3-8 2011. (bib)
M. Yigitsoy, C. Wachinger, N. Navab
Manifold learning for image-based breathing gating in MRI
SPIE Medical Imaging, Lake Buena Vista (Orlando), Florida, USA, February 2011 (bib)
2010
C. Wachinger, M. Yigitsoy, N. Navab
Manifold Learning for Image-Based Breathing Gating with Application to 4D Ultrasound
Medical Image Computing and Computer Assisted Intervention (MICCAI), Beijing, China, September 20-24 2010. (bib)

Teaching Assistance

  • Summer Term 2011
  • Summer Term 2012
  • Summer Term 2013
  • Summer Term 2014
  • Theses

  • Master Thesis Simultaneous Deformation of Medical Images

  • UsersForm
    Title: Dr.
    Circumference of your head (in cm):  
    Firstname: Mehmet
    Middlename:  
    Lastname: Yigitsoy
    Picture: foto.png
    Birthday: 20.05.1985
    Nationality: Turkey
    Languages: English, German, Turkish
    Groups: Registration/Visualization, Microscopic Image Analysis
    Expertise: Registration/Visualization, Medical Imaging
    Position: Scientific Staff
    Status: Alumni
    Emailbefore: yigitsoy
    Emailafter: in.tum.de
    Room: MI 03.13.009B
    Telephone: +49 89 289-19417
    Alumniactivity: Senior Research Scientist at Definiens AG
    Defensedate: 24 September 2015
    Thesistitle: Local and Global Consistency Measures in Intensity-based Medical Image Registration
    Alumnihomepage:  
    Personalvideo01:  
    Personalvideotext01:  
    Personalvideopreview01:  
    Personalvideo02:  
    Personalvideotext02:  
    Personalvideopreview02:  


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