by Prof. Nassir Navab
Team: Beatrice Demiray, Javier Esteban, Hendrik Burwinkel
Type: Master Practical Course Module IN2106
SWS: 6
Programs: Biomedical Computing (Master), Informatics (Master)
ECTS: 10 Credits
Preliminary Meeting ("Vorbesprechung"): Monday, 25.06. at 18:30 - 19:00 CEST in the CAMP Seminar Room 03.13.010
Further Meetings: See the schedule below.
The course will be conducted in English.
In this lab course, students work on clinical software projects and find solutions for problems in the field of medical applications. The student's workload should be around 10-14 hours per week for a period of 3 months on the assigned project (10 ECTS course).
Each project is expected to have one contact person (supervisor) who should be available for regular updates or if the student needs any help. In addition, the supervisors are kindly invited to participate in the student presentations (Requirements, Intermediate, Final) taking place at the CAMP chair. Each project supervisor will decide on 50% of the grade based on the student’s performance in the project. The other 50% will be decided upon by the class coordinators, based on the quality of project management and presentation skills of the student.
The project proposal should give a short introduction into the context and describe the most important aspects and expected outcome of the project. Furthermore it should clearly state the required (and optional) skills (programming language, experience with certain libraries etc.).
If you have a suitable project, preferably with a clinical or industrial partner, you are kindly invited to fill out the project proposal template and send it to Beatrice Demiray (beatrice.demiray@tum.de) as soon as possible.
The deadline for proposal submission is Sunday, September 9th, 2018.
The schedule is preliminary and still subject to change. Please check the course website regularly!
Date - Time CE(S)T | Place | Topic | Conducted by | Materials |
---|---|---|---|---|
Monday, 25.06.2018 - 18:30 - 19:00 | 03.13.010 | Preliminary Meeting | All course tutors | |
29.06. to 04.07.18 | TUM Matching platform | Registration | ![]() | Matching FAQ |
Thursday, 18.10.2018 - 15:00-17:30 | 03.13.010 | Introduction, Project Announcements (attendance mandatory) | All course tutors | |
Thursday, 18.10.2018 - until 23:59 | E-mail to Beatrice Demiray | Students required to indicate project preferences | ![]() | ![]() |
Monday, 22.10.2018 | E-mail / course website | Project assignments published | Beatrice Demiray | |
Thursday, 25.10.2018 - 14:00-17:30 | 03.13.010 | Lecture I: Presentation Tips & Project Management, Lecture II: Software Engineering - UML | Hendrik Burwinkel, Beatrice Demiray | ![]() ![]() ![]() |
Monday, 29.10.2018 - 10:00-12:00 | 03.13.010 | Presentation Training (attendance mandatory) | Marcus Vollrath, Beatrice Demiray | ![]() |
Monday, 05.11.2018 - 09:00-12:00 | 03.13.010 | Requirements (Kick Off) Presentations (attendance mandatory) | All course tutors | |
Monday, 05.11.2018 - 23:59 | Link will be provided | Presentation slides upload (Kick Off) | ![]() | |
Thursday, 08.11.2018 - 13:00-14:30 | 03.13.010 | Lecture III: Documentation, Testing & Integration Strategy | Javier Esteban | ![]() |
![]() | Big Auditorium @ TranslaTUM (ground floor) | Intermediate Presentations Vol. 1 (attendance mandatory) | All course tutors | |
Friday, 14.12.2018 - 10:00-14:00 | Small Auditorium @ TranslaTUM (ground floor) | Intermediate Presentations Vol. 2 (attendance mandatory) | All course tutors | |
Friday, 14.12.2018 - 23:59 | Link will be provided | Presentation slides upload (Intermdediate) | ![]() | |
Monday, 04.02.2019 - 10:00-12:30 | 03.13.010 | Final Presentations Vol. 1 (attendance mandatory) | All course tutors | |
Thursday, 07.02.2019 - 14:00-17:30 | 03.13.010 | Final Presentations Vol. 2 (attendance mandatory) | All course tutors | |
Thursday, 07.02.2019 - 23:59 | Link will be provided | Presentation slides upload (Final) | ![]() |
Thursday 13.12.2018:
Friday: 14.12.2018
Monday 04.02.2019:
Thursday: 07.02.2019
Project ID | Student | Project Title | Supervisor | Additional Material |
---|---|---|---|---|
01 | Courtney Restivo | Quantification of Tissue Oxygenation Saturation with MSOT using Deep Learning | Ivan Olefir | ![]() |
02 | Javier Danilo Coronel Baracaldo | Deep learning-based tumor detection in 3D scans | Oliver Schoppe | ![]() |
03 | Tom Nuno Wolf | Computer-aided survival, grading predicton and segmentaton of soft tissue sarcomas in MRI | Fernando Navarro, Jan Peeken | ![]() |
04 | Adria Font Calvarons | Semi-Automatic Cell Labelling Tool | Mario Emmenlauer | ![]() |
05 | Eduardo Prado | Diabetes App | Stefan Christoph Kofler | ![]() |
06 | Julio Alberto Oscanoa Aida | Accelerating water-fat MRI using compressed sensing | Stefan Ruschke, Dimitrios Karampinos | ![]() |
07 | Hyunjun Jung | Spatio-Temporal Depth Estimation in Real-Time | Benjamin Busam | ![]() |
08 | Arian Mehrfad, Yordanka Velikova, Cristina Serrano Gonzalez | Micro-manipulation – From industrial to cell-robots | Javier Esteban | ![]() |
09 | Rahman Md Salman | Cloud Service for Human Pose Estimation | Ashkan Khakzar, Raveekiat Singhaphandu, Angelica Crone | ![]() |
10 | Stefan Haninger | Ray Tracing with RT Cores for Forward Modeling in Medical X-ray Computed Tomography | Tobias Lasser | ![]() |
11 | Ivan Pavlov | Deep Field: Ultrasound simulation via deep learning | Guillaume Zahnd | ![]() |
12 | Maria Margarida Regateiro Machado e Costa | Carotid Wall Shear Stress | Guillaume Zahnd | ![]() |
13 | Aashay Tinaikar | Ultrasound Confidence Map | Guillaume Zahnd | ![]() |
14 | Navdar Karabulut | DeepFormer Data Analysis Tool | Walter Simson | ![]() |
15 | Aidana Massalimova | DeepFormer SUPRA Integration | Walter Simson | ![]() |
16 | Mariya Stankevich | Proteins Colonies Illumination and Behavior Analyzing Software | Andre Stiel | ![]() |
17 | Berk Olcay | Mobile test for spatial memory | Virginia Flanagin | ![]() |
18 | Awais Shafique | Adaptation of Weakly-supervised Convolutional Neural Networks Registration for Neurosurgical Setting | Julia Rackerseder | ![]() |
19 | Hooriya Anam | Utilizing Confidence Maps for Accurate 3D Brain Image Registration | Julia Rackerseder | ![]() |
20 | Jorge Mario Guerra Gonzalez | Implementation of Landmark free 3D US to MRI Registration Initialization | Julia Rackerseder | ![]() |
21 | Amir Nourinia | Fully Automatic Fusion of large 3D Microscopy Volumes | Mario Emmenlauer | ![]() |
23 | Michael Wengler | Arivis Vision4D plugin for automatic vessel segmentation in LSFM stacks | Beatrice Demiray | ![]() |
24 | Khac Thanh-An Le | Blood Vessel Quantification in MRI | Beatrice Demiray | ![]() |
25 | Granit Bimbashi | 3D Ultrasound for Thyroid Imaging | Thomas Wendler | ![]() |
26 | Christina Bukas | Brachytherapy Planning Software | Thomas Wendler | ![]() |
27 | Christopher Watanabe | Monte Carlo simulations for Brachytherapy | Thomas Wendler | ![]() |
30 | Desislava Dimova | Dose Prediction Software for SIRT | Thomas Wendler | ![]() |
31 | Rajat Chhabra | Development of a software solution for recognizing motion in various video sources deployed in a clinical environment | Claudia Mattes | ![]() |
TeachingForm | |
---|---|
Title: | Project Management and Software Development for Medical Applications |
Professor: | Prof. Nassir Navab |
Tutors: | Beatrice Demiray, Javier Esteban, Hendrik Burwinkel |
Type: | Praktikum |
Information: | 6 SWS, 10 ECTS Credits (Module IN2106) |
Term: | 2018WiSe |
Abstract: |